Detailed information on CNT30555884


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30697397Oryza glaberrimaOryza sativa45.2929.92100149forward
CNT30677319Oryza glaberrimaSetaria viridis20.3624.5486.5767forward
CNT30524578Oryza glaberrimaSetaria italica20.3616.0786.5767forward
CNT30250949Oryza glaberrimaAvena sativa25.5320.9591.6784forward
CNT30342139Oryza glaberrimaEragrostis tef20.3619.9486.5767forward
CNT30578365Oryza glaberrimaOryza barthii37.9922.08100125forward

Expression of CNT30555884

Peptides detected in this lncRNA

>peptide 1 (93 aa)
EQSTEVLMGKATETPHLLGMEAALPMLRFLKEEAMFLRQLQARRDRRRHVAAAHRRRRPLRHHRRRHHRHQRNQRHRPASTRHCLDRDLALAN*

>peptide 2 (91 aa)
AVDGGADGEGDGDAAFAGDGGGVAHVEVPEGGGHVLEAAAGTARSTTSRRRSSPPPTPSPPPPPPPPPPPTQPAPSSCEHPPLSRSRSSSS*

Sequence

>CNT30555884
GAGCAGTCGACGGAGGTGCTGATGGGGAAGGCGACGGAGACGCCGCATTTGCTGGGGATGGAGGCGGCGTTGCCCATGTTGAGGTTCCTGAAGGAGGAGG
CCATGTTCTTGAGGCAGCTGCAGGCACGGCGCGATCGACGACGTCACGTCGCCGCAGCTCACCGCCGCCGACGCCCTCTCCGCCACCACCGCCGCCGCCA
CCACCGCCACCAACGCAACCAGCGCCATCGTCCTGCGAGCACCCGCCATTGTCTCGATCGAGATCTAGCTCTAGCTAACTAGCAACAATGTACACTGGTA
GTGAGCTGTAAGCTATAGCTTGTGGTGAG