Detailed information on CNT30555880


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30111180Oryza glaberrimaOryza longistaminata18.0438.44100138forward
CNT30578100Oryza glaberrimaOryza barthii6056.53100459forward
CNT30117818Oryza glaberrimaOryza nivara56.3445.997.68431forward

Expression of CNT30555880

Peptides detected in this lncRNA

>peptide 1 (74 aa)
MSNNKTSAVSSSAAGIMSRSLLQSSTTTDDEHVTEMLLHWLLLPACTAAACRSLLLLGLWQWLSVLICDASTTT*

>peptide 2 (39 aa)
MDVLQYCVVFSSLLCSEQPVGNDVHSQAILLLLRSVHLR*

>peptide 3 (38 aa)
REDIWRPQIVPRYWSLNRDMLALTPMERNQLFQSAGRQ*

>peptide 4 (36 aa)
MYSSTVSFLVRCCVLSSQLATTYTVKPFCCCFVLST*

>peptide 5 (35 aa)
MQSCRTTRHQRSVHQQLASCQEAYCNPQRRLMMNM*

Sequence

>CNT30555880
AGAGAAGATATATGGAGACCACAAATTGTCCCTCGTTACTGGTCCCTGAATAGGGACATGCTTGCTTTGACTCCAATGGAACGCAATCAATTGTTCCAAT
CGGCTGGCCGGCAGTAACTGGGATGTTTTACTCCATCGAAAACACGGCGTGACCGTGCGAGTCAAGAAGGAATACAGCCCTTCTGTTCATTTTGACAGCA
GCTCGGATGGATGTACTCCAGTACTGTGTCGTTTTTAGTTCGCTGTTGTGTTCTGAGCAGCCAGTTGGCAACGACGTACACAGTCAAGCCATTCTGCTGC
TGCTTCGTTCTGTCCACCTAAGGTAAAACCATAATGGAGCTGATTTGAAAAGAAAACTACTGACGACGAGGCGACGAGGATGGATAGATGGATCAACTTT
AAAAATAAATGAGATGTGCGTGAAACATCTCGTTCTTTTGGTGATGTCCTGAAACGAGTTGATATCCAAATCTAAAGGTGCATATGCAGTCATGTCGAAC
AACAAGACATCAGCGGTCAGTTCATCAGCAGCTGGCATCATGTCAAGAAGCTTATTGCAATCCTCAACGACGACTGATGATGAACATGTGACGGAGATGT
TGCTGCACTGGCTGCTGTTACCGGCGTGTACTGCCGCAGCCTGCAGATCGCTGCTGCTGCTCGGACTCTGGCAATGGCTGTCGGTGCTAATCTGTGATGC
TTCGACGACGACATGATCATCAGCTAATGCCGCAGGGCCCTTGCAGCAGGTATGCTGGCCGTAGT