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Detailed information on CNT30555837


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONOSAT000888, E-value = 5e-121

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30604733Oryza glaberrimaOryza punctata54.4796.4291.95323forward
CNT30551432Oryza glaberrimaOryza brachyantha36.5910.8981.57217forward

Expression of CNT30555837

Peptides detected in this lncRNA

>peptide 1 (78 aa)
MVSLFVPRVGDSRCRESICGDGPGVGLGIKRYLWWSEIMRDPKARVQCTWMVKFPYGIRWRYCLCKVCFLYEKVSYGD*

>peptide 2 (37 aa)
PMLCWFRFRVDCFDIRDCFMNMTSRYILCVCNTVVCY*

Sequence

>CNT30555837
CCGATGCTGTGTTGGTTTCGGTTTCGGGTTGATTGTTTTGATATCCGTGATTGTTTCATGAATATGACTTCTAGATATATACTATGCGTATGTAATACTG
TTGTTTGCTACTAATGAGTCAAGTTGGGGATAGCTTAGTCTCGGAATATGGTTTCTTTGTTTGTTCCACGTGTAGGTGACTCGAGATGCCGGGAGAGTAT
TTGCGGTGATGGACCGGGAGTCGGCTTAGGGATAAAACGATATCTGTGGTGGTCAGAGATCATGCGAGATCCTAAGGCTAGAGTGCAATGCACGTGGATG
GTGAAGTTTCCATATGGCATACGATGGAGGTATTGTTTATGTAAAGTTTGTTTCTTGTACGAGAAGGTTTCCTATGGGGATTAGGACTTCTGTATGAGTT
TGGTTCGTGGCTTTAGGCTGCCTACCTCGGGTATAAATAGAGAGGGAGCGTGAGGCTTCTCGGTATCGCTTTTAAGAGCATTGAGTTGATAGTTTAGTTA
GGGTTTCTAGTTTACTCGAGATTTTTGTAAGGAGTGTTGTTGGTGCACTTTGTAAACACAGAGAGAATCAATAAAGTCGTCATCCACTTTAAG