Detailed information on CNT30555782


BLAST search results

BLAST vs Swiss-Prot:
sp|Q2QLY5|METE1_ORYSJ, E-value = 4e-44

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30672574Oryza glaberrimaSetaria viridis35.6824.7490.85142forward
CNT30533996Oryza glaberrimaEucalyptus grandis17.3428.2886.9669forward
CNT30491477Oryza glaberrimaOlea europaea19.124.3685.5376forward
CNT30711924Oryza glaberrimaGlycine max43.7231.6980.46174forward
CNT30223402Oryza glaberrimaHordeum vulgare26.1323.9184.62104forward
CNT30282Oryza glaberrimaZea mays37.6949.3488150forward
CNT30578457Oryza glaberrimaOryza barthii65.5846.0398.85261forward

Expression of CNT30555782

Peptides detected in this lncRNA

>peptide 1 (36 aa)
LYDSAGMSAKYVSISTFNPESADSSSVYAAENAANW*

>peptide 2 (36 aa)
MLLRRERRANDFSTPLAGLESNKYETGPTSTGTVSTP

Sequence

>CNT30555782
CTTGTATGATTCAGCAGGAATGTCAGCGAAGTATGTCTCAATAAGCACATTCAATCCAGAAAGTGCCGACTCGAGTTCTGTGTACGCTGCAGAGAATGCA
GCCAATTGGTGAGAGTCAAGGTCAAGAACAAGTGTGGGTTCATCAAACTGAATCCATGTAGCACCAGCTGCCTTCAACTCAGCAATAACCTCCCTACAAA
TCATCATGCATCAAATTATGAACTGAAGATTTAGCGCTAGCAGCAGTTATAGACTTGTTTGTACACTTACTTGTAGACAGGAAGGATGCTGCTGAGAAGG
GAAAGAAGAGCGAACGACTTCTCTACACCCTTGGCAGGTTTGGAGAGCAACAAGTATGAAACTGGTCCAACAAGTACTGGCACGGTGTCAACGCCAAG