Detailed information on CNT30555770


BLAST search results

BLAST vs Swiss-Prot:
sp|Q2QLY4|METE2_ORYSJ, E-value = 3e-38

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30224666Oryza glaberrimaHordeum vulgare26.5345.0588100forward
CNT30264857Oryza glaberrimaBrassica rapa16.4520.687.162forward
CNT30212158Oryza glaberrimaHelianthus annuus26.7925.9682.18101forward
CNT30129112Oryza glaberrimaCorymbia citriodora23.0823.3983.9187forward
CNT30367300Oryza glaberrimaSorghum bicolor29.1824.3985.45110forward
CNT30333329Oryza glaberrimaCynara cardunculus29.1822.7382.73110forward

Expression of CNT30555770

Peptides detected in this lncRNA

>peptide 1 (61 aa)
LNCLPFPTIASRDSRVVRDAARSSAQMLRPSTTPAKRYLPEGKPALLTRSRVLEPRIRSKP*

>peptide 2 (35 aa)
MLRPSTTPAKRYFPEGKPALLIRSRVLAPRIRSKP*

Sequence

>CNT30555770
TGCTTAATTGCTTACCCTTTCCAACAATAGCCTCAAGAGACTCGAGGGTGGTGAGAGATGCGGCGAGATCATCAGCCCAGATGTTGCGCCCATCCACAAC
ACCAGCAAAGAGGTACTTGCCAGAGGGGAAACCAGCACTCTTGACAAGGTCAAGAGTCTTGGAACCACGGATAAGGTCAAAACCATAAGCAGTCACGCTG
TTCAGGGATGTGAGGGTCCTGCAATCATCAGCCCAGATGTTGCGTCCATCCACAACACCGGCAAAGAGGTACTTTCCAGAGGGGAAACCAGCACTCTTGA
TAAGGTCAAGAGTCTTGGCTCCACGGATAAGGTCAAAACCATAAGCAGTCACGCTGTTCAGGGATGTGAGGGTCCTG