Detailed information on CNT30555769


BLAST search results

BLAST vs Swiss-Prot:
sp|Q2QLY4|METE2_ORYSJ, E-value = 1e-76

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30672500Oryza glaberrimaSetaria viridis48.2463.6692.68205forward
CNT30404178Oryza glaberrimaBeta vulgaris20.2422.486.0586forward
CNT30563287Oryza glaberrimaActinidia chinensis24.9422.8484.91106forward
CNT30440702Oryza glaberrimaAegilops tauschii63.7682.1293.36271forward
CNT30689646Oryza glaberrimaTriticum urartu5276.7493.21221forward
CNT30721908Oryza glaberrimaTriticum spelta63.7685.4993.36271forward
CNT30361575Oryza glaberrimaSorghum bicolor66.8244.4490.85284forward
CNT30597233Oryza glaberrimaOryza meridionalis84.2497.2899.16358forward
CNT30322845Oryza glaberrimaAsparagus officinalis83.7626.7982.3356forward
CNT30104304Oryza glaberrimaOryza rufipogon83.2910099.44354forward
CNT30578494Oryza glaberrimaOryza barthii83.53100100355forward
CNT30118019Oryza glaberrimaOryza nivara82.8210099.43352forward
CNT30333334Oryza glaberrimaCynara cardunculus81.8843.6181.9348forward

Expression of CNT30555769

Peptides detected in this lncRNA

>peptide 1 (53 aa)
MYLIPASAICFQMLALRSVATFSKSSALLFPSQKDSRANLSSLLGPMRGYPTM*

>peptide 2 (33 aa)
VGVKPLGHLHSRDSGISPSHREVGAEPNLSTSP*

>peptide 3 (29 aa)
MSSALGQHQAWQSCQEPDHSTRRCCWGCT*

Sequence

>CNT30555769
TAGTTGGTGTCAAACCACTTGGTCATCTCCATAGCAGGGACAGTGGCATTTCCCCTAGCCATCGAGAAGTAGGTGCTGAACCCAATCTCTCCACCAGTCC
ATGAGTAGCGCTCTGGGACAGCACCAAGCATGGCAGTCGTGTCAAGAACCTGATCATAGTACGAGAAGGTGTTGCTGGGGATGTACTTGATCCCAGCGTC
AGCCATTTGCTTCCAGATGCTGGCCCTGAGGTCGGTCGCAACCTTCTCCAAATCCTCAGCGCTGCTCTTCCCATCCCAGAAAGACTCCAGGGCAAACTTG
AGCTCCCTCTTGGGGCCCATGCGGGGGTACCCAACAATGTGAGACGCCATCTTTCTATAAAAAAAATACAATTGTACTACCATCAGTTTGATTCAAATAA
ATGCCATGTGAATACATAGGAAAAT