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Detailed information on CNT30555755


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30225212Oryza glaberrimaHordeum vulgare6.9420.288.7580forward
CNT30397702Oryza glaberrimaTriticum turgidum10.3231.0784.03119forward
CNT30578553Oryza glaberrimaOryza barthii37.8177.17100436forward

Expression of CNT30555755

Peptides detected in this lncRNA

>peptide 1 (34 aa)
YTEMFYQLLTRCNSYLSSAWWSSYRTCTWSDPAW*

>peptide 2 (63 aa)
MEFGKEIPDLRFHFTFVSPKHLYLKLVILPSFSLKILTVGIVLHQFSQAIKVDLFTYFDRPNI*

>peptide 3 (36 aa)
IIQRCSTNSSHVVIPTCHRHGGVAIALAPGRIQHGS*

Sequence

>CNT30555755
ATTATACAGAGATGTTCTACCAACTCCTCACACGTTGTAATTCCTACTTGTCATCGGCATGGTGGAGTAGCTATCGCACTTGCACCTGGTCGGATCCAGC
ATGGTAGCTAGACCTGACGGCCCATGAGCTCCGTGCGGTTAGATTGGGGTGGTCCCTGAGCTCCAAACGGCCGCCACGCCGGGAGAGAGGATGGGAGTCG
CCACCGCTACTCCCATACGGGCTTGTCACTTCTTCCCCAAAATGGTTTGCTATTGATGTAGCGGAAATAGTGAACCTCGTGGAAGGAGTAGCGAGTCTTG
TACGGAGCCACCAGCATTAATATAGAGGTTCCGTGATAGCGGATAATGAGGAAATAAAGAACTTGAGAATAAAAGTGTTTTATGGATACAAATTGGGTGA
AATTAAAGCAGAGATCGGGAAGAAGAAGTTAGGGAATTGAGATTGGAGAAATGGAATTTGGGAAGGAGATTCCCGATCTCCGCTTCCATTTCACCTTTGT
ATCCCCAAAACACCTCTATCTCAAGCTAGTTATTTTACCTAGCTTTTCATTGAAAATTTTAACAGTCGGTATAGTGCTCCATCAATTCTCTCAAGCAATT
AAGGTTGACTTATTTACATATTTTGACCGGCCGAACATATAGTCGCATATACATTCAACCGATGGATGGATCGATCGGAAACATCTTTAATTATGTTCTG
CTTCGATCGTCGTCTTGTCTTGAGCAATAATCAAGCTGCCACATCTCAATAATCTGTAGCGAGCGACAAGTATAGTATATAATCACCCCCGAAGAAAAAG
TAGTACTCCTCCGTAGTATTATATAATTAGTGGGCATGATCTGTAGGTAAAAAATCAGGCTCGGGTGCGGTTATTGTTGATTAGCAGCGCGGAGCAAGGA
GAGGTAGTAGGGCACGTTGCGGGCGCCGGCGACGTGGCCCTTGTCGAAGTCCTCCCACATCCTCACGTCCAGGTATTGGTGCCTCCCCGAGCTCAGCAGC
GCGCACGCCTCCTCCGCGTCCACGCTCCTCATCACCCTCTCCGTCTCCTCCTGCTTACTGCAATCTCCTCCTCCTCCGCCGTCGCCGCCGCCTCCTCTCA
GCGAGCCCATATCGATCGATCGATCGGTCGACCGGCGCTTAGCTGGGTGTGGC