Detailed information on CNT30555750


BLAST search results

BLAST vs Swiss-Prot:
sp|P18566|RBS2_ORYSJ, E-value = 1e-118

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30371494Oryza glaberrimaOryza glumipatula33.0272.2699.6495forward
CNT30578479Oryza glaberrimaOryza barthii57.194.2799.65856forward
CNT30118036Oryza glaberrimaOryza nivara47.2397.1294.92708forward
CNT30604900Oryza glaberrimaOryza punctata34.3679.1190.87515forward

Expression of CNT30555750

Peptides detected in this lncRNA

>peptide 1 (68 aa)
MKLINCTCLTLSKPMMRTNASGYAFLASSSSLSTWVASVHPNMGSFHMGKGKPMQGGPIRTFKAAKTE*

>peptide 2 (54 aa)
MKLINCTCLTLSKPMMRTNASGYAFLASSSSLSTWVASVHPNMGSFHMVQYLPS*

>peptide 3 (50 aa)
MHLILPPLLTLPKPELVERRLTGRPAVDLSPWNGATEVAEEAITVGAIAT*

>peptide 4 (43 aa)
MHVLPHIIEMETRGIKFGLSIVLHISIVFDDLYNIFITMCMCI*

>peptide 5 (29 aa)
MHALQPMLIHTYVHTYTADVDTNKMKKKN*

Sequence

>CNT30555750
GTGTATCTTTGAACTGTTTGCATGGAAACGAATTAAGTAATTCCCAACAATGCTATGCATGTCCTACCACACATAATTGAAATGGAAACCAGAGGTATCA
AGTTTGGTCTGAGTATAGTATTACATATAAGTATCGTTTTTGACGATTTGTACAATATATTTATTACGATGTGTATGTGCATATGATTAGCCTGGTGCTA
GCATTCACATATGCATGCTCTTCAACCTATGTTGATACATACATATGTACATACATACACAGCTGATGTTGACACAAACAAGATGAAAAAAAAAAACTGA
AGCAACAAACTGGGAAAGGGGAAACCAATGCAAGGTGGCCCGATTCGAACGTTCAAAGCTGCCAAAACCGAATAGATCAATCGAGTCTCCTCTGTATAGA
GCTCACGAGTGAGCTTGCTGGCTTGCCAACTAGCTTAGTTTCCGCCGGACTCCTCGCAACCCGGGGGCTTGTAGGCGATGAAGCTAATCAACTGCACCTG
CCTGACGTTGTCGAAGCCGATGATGCGAACAAATGCATCTGGATATGCCTTCTTGGCCTCCTCGAGCTCCTTGAGCACCTGGGTGGCATCAGTGCATCCG
AACATGGGCAGCTTCCACATGGGAAAGGGGAAACCAATGCAAGGTGGCCCGATTCGAACGTTCAAAGCTGCCAAAACCGAATAGATCAATCGAGTCTCCT
CTGTATAGAGCTCACGAGTGAGCTTGCTGGCTTGCCAACTAGCTTAGTTTCCGCCGGACTCCTCGCAACCCGGGGGCTTGTAGGCGATGAAGCTAATCAA
CTGCACCTGCCTGACGTTGTCGAAGCCGATGATGCGAACAAATGCATCTGGATATGCCTTCTTGGCCTCCTCGAGCTCCTTGAGCACCTGGGTGGCATCA
GTGCATCCGAACATGGGCAGCTTCCACATGGTCCAGTACCTGCCATCATAGTACCCAGGAGACCTGTGGTTCTCACGGTAGACGAACCCGACCTTACTAA
ACTCGAGGCAAGGCACCCATTTGGACCGGAGCAGGTACTCGATCTGCTTCAAGAGATCCTCCACGGTGAGTGGTGGCAGGTACGATAGGGTCTCGAACTT
CTTGATGCCCTCAATTGGCCACACCTGAATAAATAATGTAAAAATTTAAATCAGGTTAATTTGAATTTCGTAACATGAGTTAATTTGATCCTTGACTTTA
AAGGAGAAGCCTGAGGAGGTATATATCATATATACCTGCATGCACTTGATCCTTCCGCCATTGCTGACGTTGCCGAAGCCCGAGTTGGTGGAGCGGCGGC
TGACGGGGAGGCCGGCGGTGGACTTGAGCCCTTGGAATGGAGCCACGGAGGTGGCCGAGGAGGCCATCACGGTGGGGGCCATAGCCACGTAGTTAGCTAG
CTAGCTTACTGGCTAGTAGTAGTAGAGTATGTCCAGTAGCAGTGCTGTTGAGGCCCTGTACGCTGGTTCACCAGCAGCTTATATAAACAGCAATCGTAT