Detailed information on CNT30555748


BLAST search results

BLAST vs Swiss-Prot:
sp|Q38793|RBS_AEGTA, E-value = 1e-23

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30521306Oryza glaberrimaSetaria italica42.3513.489.81108forward
CNT30186232Oryza glaberrimaSecale cereale39.6115.6693.07101forward
CNT30597191Oryza glaberrimaOryza meridionalis10087.9399.61255forward
CNT30150857Oryza glaberrimaBrachypodium distachyon37.6518.5389.5896forward

Expression of CNT30555748

Peptides detected in this lncRNA

>peptide 1 (48 aa)
RILPPLLTLPRPAPLERRLTGSPAVDLSPWKGATEVAEEAITVGAIAT*

>peptide 2 (51 aa)
ADPSTVADAAEAGAVGAAADGEPGGGFEPLEGSNGGGRGGHHGGGHSHVVS*

Sequence

>CNT30555748
GCGGATCCTTCCACCGTTGCTGACGCTGCCGAGGCCGGCGCCGTTGGAGCGGCGGCTGACGGGGAGCCCGGCGGTGGATTTGAGCCCCTGGAAGGGAGCA
ACGGAGGTGGCCGAGGAGGCCATCACGGTGGGGGCCATAGCCACGTAGTTAGCTAGCTAGCTTACTGGCTAGTAGTAGTAGAGTATGTCCAGTAGCAGTG
CTGTTGAGGCCCTGTACGCTGGTTCACCAGCAGCTTATATAAACAGCAATCGTAT