« Back to Oryza glaberrima search


Detailed information on CNT30555744


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30697725Oryza glaberrimaOryza sativa99.5393.6299.68631forward
CNT30104612Oryza glaberrimaOryza rufipogon94.9596.6399.67602forward
CNT30118020Oryza glaberrimaOryza nivara68.7765.7699.54436forward

Expression of CNT30555744

Peptides detected in this lncRNA

>peptide 1 (47 aa)
MASHSCHGMTFLHYYSGPPNVQSQKRWIESINHCLFCLYTKKVHLFC*

Sequence

>CNT30555744
CTTTCCCAACCTAGTAGCGGCGAATAGTTAAATTCCCCGGCTTCGCCCCCGAATTAACGTGGGGTCGAGGTTCTTTCATCATCGCTCGATCTGCGCCCCG
TCGATGTGTGTGGTCGTGGTTTGGGTGGGGGTTGCTTAACCGGCGCTGTTTGCGGCGGATCAAGCCTCCTTCGACCTTTGCGAAGCAGTCTGAGCGTGAG
CGGGGAAGGAGTTGAAGACAGGCATTGAGAAGGGTGCTCCAGATCCAGTGGATCTTTTCCGATCCAGGTATCAGAGTGCTCGGGTAAGCTCAAGGTCATT
TACAATTGGAATGCTTTTGTCTGATTTCTTGAGGCGCTGGCACTTCTTGAGGATTGGTATCCATCAAATCAACGAGTTGGGCAAATAGATATCCTTCACA
ACAAGAGAAAGTTGTATCCATGGCAGCAAACTCAGGTTCTTCAAACATAAATGTAGATCCATAAACATTTTTTGATTCCTCATATGGCATCTCATTCATG
CCATGGTATGACATTTTTACATTATTATAGTGGTCCACCTAATGTTCAATCACAAAAAAGGTGGATAGAGTCAATTAACCATTGTCTATTTTGTTTGTAT
ACAAAAAAAGTTCACTTGTTTTGCTAACCTTGAT