Detailed information on CNT30555741


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30377828Oryza glaberrimaArabidopsis thaliana21.2713.6291.4947forward
CNT30478263Oryza glaberrimaArabidopsis halleri21.2713.5891.4947forward
CNT30597166Oryza glaberrimaOryza meridionalis84.6266.3198.4187forward
CNT30105511Oryza glaberrimaOryza longistaminata92.768299.02205forward
CNT3027096Oryza glaberrimaPopulus trichocarpa47.0629.8982.69104forward
CNT30104583Oryza glaberrimaOryza rufipogon95.9310099.53212forward
CNT30578422Oryza glaberrimaOryza barthii93.67100100207forward
CNT30118059Oryza glaberrimaOryza nivara80.5460.7597.19178forward

Expression of CNT30555741

Peptides detected in this lncRNA

>peptide 1 (61 aa)
LNCLPFPTIASRDSRVVRDAARSSAQMLRPSTTPAKRYFPEGKPALLIRSRVLAPRIRSKP*

Sequence

>CNT30555741
TGCTTAATTGCTTACCCTTTCCAACAATAGCCTCAAGAGACTCGAGGGTGGTGAGAGATGCGGCGAGATCATCAGCCCAGATGTTGCGCCCATCCACAAC
ACCAGCAAAGAGGTACTTTCCAGAGGGGAAACCAGCACTCTTGATAAGGTCAAGAGTCTTGGCTCCACGGATAAGGTCAAAACCATAAGCAGTCACGCTG
TTCAGGGATGTGAGGGTCCTG