Detailed information on CNT30555739


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONORUT002495, E-value = 0.0

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30697623Oryza glaberrimaOryza sativa42.8741.0398.74716forward
CNT30596562Oryza glaberrimaOryza meridionalis18.6830.292.63312forward
CNT30104911Oryza glaberrimaOryza longistaminata17.6634.5488.81295reverse complement
CNT30578379Oryza glaberrimaOryza barthii29.6496.6897.78495forward
CNT30117984Oryza glaberrimaOryza nivara20.1833.7798.22337forward

Expression of CNT30555739

Peptides detected in this lncRNA

>peptide 1 (78 aa)
MSVSESLVLGSDNTLLRTRSTSYDLTSFGTPRILRLGRSREIELLMTMVPISSGDILRSGWISPQRSRRVACCQRIHS*

>peptide 2 (64 aa)
MVVFLLESVPGEIRDRAFVSPDSIRRHRRGLAVLIPEVDIWRLVLAYVGLYVVASVVPSRLWWV*

>peptide 3 (69 aa)
MFPRQRRRSPPTRAPAPLLSLFSVFGWKKKQKERGYGRKRKRKEKNLPDRVHLMFLPKSGVQSHKLIPF*

>peptide 4 (51 aa)
MASCLGVCWLVCCGFCCSLPSMVGVDCVDCPCMLIVWIFHILVLLKNLFRK*

>peptide 5 (44 aa)
MSAGGKHLPPPFQPLPSLPLPDDCLLGCASLGHVSPSTSPFPAN*

>peptide 6 (40 aa)
SIHPSSLSLSRCLLSTMTGHHHCHRPISSSTALHPKTLRH*

>peptide 7 (49 aa)
MSKRMQRRSRLLKLYQLTDPGLDTVKHVGFRIISFGIRQYLTAYSFDII*

>peptide 8 (47 aa)
MLACMLWLLLFPPVYGGCRLCRLSVYVDCLDFSHFGPFEKLISQIDP*

>peptide 9 (44 aa)
HPSELSLSLSLSSLYHDRPPPLPPADLLFHSPTSQNLAPLARPR*

Sequence

>CNT30555739
TCCATCCATCCGAGCTCTCTCTCTCTCTCTCGCTGTCTTCTCTCTACCATGACCGGCCACCACCATTGCCACCGGCCGATCTCCTCTTCCACAGCCCTAC
ATCCCAAAACCTTGCGCCATTAGCTCGGCCTCGATGAGGTGAATCCATTTTGCCCCTTTCCACCTTCTCTCCCCCTTTGAATCAAGCCATCACCACCACC
ATCCATGTCGGCCGGAGGTAAGCACTTGCCGCCGCCGTTCCAGCCTCTTCCCTCACTCCCTTTGCCAGACGACTGCCTCCTTGGGTGCGCGTCGCTCGGA
CATGTTTCCCCGTCAACGTCGCCGTTCCCCGCCAACTAGAGCACCGGCGCCCCTCCTCTCCCTGTTCTCTGTGTTCGGCTGGAAGAAGAAGCAGAAGGAG
AGAGGATACGGGAGGAAGAGAAAAAGAAAAGAAAAGAATCTCCCTGACAGAGTCCATTTGATGTTCTTGCCGAAGTCAGGAGTTCAATCACATAAGTTAA
TTCCCTTTTAACTTAATCTTCAAGTTTAGGTTATTTAGATGGTTTAAGTCTATAGTAAAACAGCAGAGTTAGGTCATTCTAAAGCTTCTGTTGTAATAGT
TAGCCACAATCTCGTAAACACCCTATTACTTTATGTAATAATATCTCCTTCAAAGCTATGTCTAAACGTATGCAAAGACGATCTAGATTGTTGAAGCTGT
ATCAACTTACTGATCCAGGGCTTGATACAGTTAAACATGTCGGTTTCCGAATCATTAGTTTTGGGATCCGACAATACCTTACTGCGTACTCGTTCGACAT
CATATGATCTGACGTCTTTTGGTACGCCACGTATCTTGAGGCTTGGTCGATCTCGAGAGATCGAATTGTTGATGACGATGGTTCCAATCTCGTCGGGAGA
CATACTCCGGTCAGGTTGGATCTCCCCACAGCGAAGTCGTCGAGTAGCTTGTTGTCAGAGAATCCATTCTTAAACCCATCTCGTCGAAAACCTTTAAGCA
CCAAAAATCCCCCTACCTGGCGCACCACTGTCGACGTTTGATGTCGCGATTCCGGTATTTGCATAGTATGGGGATCGTTGGTACCAGGGTATATGCGAGA
TTGAGGTAAAAGAGACGGAGACGAGGATTTTTATATAGGTTCGGGCCCCTGAATTGTCAGGTAATAACTCTACATCCTGTTGGCCGAAGCCGGTCGTTGC
TCTTATTCATCATAATCACACTAGTACAATATTTGGGGTAGCCTATCTAACTGTTGTCGACATGGCGGTCTGAAGGTCTGACTCGTAGTCGACAACATGG
TAGTCTTCCTCCTCGAATCCGTGCCCGGCGAGATCAGAGATAGAGCTTTCGTCTCTCCTGACAGTATCCGGAGACACCGTAGGGGACTAGCCGTGCTTAT
CCCTGAAGTCGATATATGGCGTCTTGTCTTGGCGTATGTTGGCTTGTATGTTGTGGCTTCTGTTGTTCCCTCCCGTCTATGGTGGGTGTAGATTGTGTAG
ATTGTCCGTGTATGTTGATTGTCTGGATTTTTCACATTTTGGTCCTTTTGAAAAACTTATTTCGCAAATAGACCCCTGAAAAAACTTATCCCAGAAATAG
TCCTTTTTGGGGCGCCAGAGTGGCTGGCGCCGTCATCCAACGGGACGGCGCCAGCCTCTCTGGCGCCGTC