CANTATAdb - search

Detailed information on CNT30555734

BLAST search results

BLAST vs Swiss-Prot:
sp|O49290|CPPM_ARATH, E-value = 5e-22

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30697485	Oryza glaberrima	Oryza sativa	50.84	73.5	91.81	452	forward
CNT30371470	Oryza glaberrima	Oryza glumipatula	49.04	75.43	99.54	436	forward
CNT30104541	Oryza glaberrima	Oryza rufipogon	22.16	18.27	98.98	197	forward
CNT30578423	Oryza glaberrima	Oryza barthii	38.92	30.81	100	346	forward
CNT30118018	Oryza glaberrima	Oryza nivara	69.85	28.63	99.68	621	forward
CNT30604894	Oryza glaberrima	Oryza punctata	87.51	32.03	88.69	778	forward

Expression of CNT30555734

Peptides detected in this lncRNA

>peptide 1 (64 aa)
MDRRSIWTVHTSILTQNSDRCIAAYTVLNRKKIGKRRILNTYLPYSLCAESRTQSQHNHSHSNI*

>peptide 2 (98 aa)
QNNSVHKKMSNSPMVDGPWADFIPNKFEGTLNMTLTDRQMLHGSTINLDRPHEHTDPKFRQMHSCIYCTESKKNWKTKNTQHIFTLQFMCGITHPIPT*

>peptide 3 (44 aa)
MSSQESRPTRLLNSAKVVRRWSSSRVVSARLRAARTSTRARAAA*

Sequence

>CNT30555734
ACAGAATAATTCAGTCCACAAGAAGATGTCGAACAGCCCAATGGTAGACGGTCCATGGGCCGATTTTATTCCAAATAAATTTGAAGGTACACTGAACATG
ACACTGACTGACAGACAGATGCTTCATGGATCGACGATCAATCTGGACCGTCCACACGAGCATACTGACCCAAAATTCAGACAGATGCATAGCTGCATAT
ACTGTACTGAATCGAAAAAAAATTGGAAAACGAAGAATACTCAACACATATTTACCTTACAGTTTATGTGCGGAATCACGCACCCAATCCCAACATAATC
ACTCACACAGCAATATATAGCTACGTACCATGCAATAATAACACATACCTCACAAAATTCACCAATAATGCAGGAGAATTAATCAATGTAATCCACCATA
TTTCATGGCTCCCTGATGGCCAGCCACATTTCGATTGATAATTTATTCCATTGGTAGCTTGATCTTGATCGATCTTAGTGTACCCCATTGGTAGCGCCAT
TGGTAGCTCCGTTTCCGGCAACGACGGCGGCCGCCTTGGCCTTAGCCTTCTCCATCTCCGTCGTGGTCGTCGTCTCCGGCGCCGGCAGTGGCTTGGGAAC
GGAGGAGTTGACGGAGAAGCGGGCCTCGATGTCGAGCCAGGAGTCGAGGCCGACGAGGTTGTTGAACTCGGCGAAGGTGGTGAGGCGGTGGAGCTCGTCG
CGGGTGGTCTCGGCGCGCTTGAGGGCGGCGAGGACGTCGACGAGGGCGCGGGCGGCGGCGTAGACGGTGGTGAGGGGGGACTTGATGAGCTCCTGCCTCG
TGTGCAGCGGCGTCTTCCCGCCCTCCAGCATGTTGCACACGCGATAACCCTTGGTCCTCCTGCAGATCTCCATCAGCTCCTCGTCGCTC