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Detailed information on CNT30555733


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30673472Oryza glaberrimaSetaria viridis7.2433.5592.23103forward
CNT30292590Oryza glaberrimaTriticum aestivum6.6833.3394.7495forward
CNT30222490Oryza glaberrimaHordeum vulgare14.4943.8383.5206forward
CNT30564216Oryza glaberrimaActinidia chinensis4.2226.9191.6760forward
CNT30438727Oryza glaberrimaAegilops tauschii6.4729.1195.6592forward
CNT30662078Oryza glaberrimaTriticum dicoccoides12.246090.23174forward
CNT30683149Oryza glaberrimaTriticum urartu6.6821.4494.7495forward
CNT30344816Oryza glaberrimaEragrostis tef7.0323.5397100forward
CNT30597198Oryza glaberrimaOryza meridionalis81.9386.9497.941165forward
CNT30582613Oryza glaberrimaEchinochloa crusgalli10.0629.1887.41143forward
CNT30115596Oryza glaberrimaOryza nivara959.53100128forward

Expression of CNT30555733

Peptides detected in this lncRNA

>peptide 1 (93 aa)
MGNLSMLFSSLASSTDLLRLDGLDCEAGPPCQRSTRQPPRLGAHQAALHQLARHGSISSGHLSPLVSSFLSLARCSLSRPKKMDVKQPSWQLP*

>peptide 2 (36 aa)
MALTVKRGLLVSEAPDSPLGLEHTKLLFISWLAMGA*

>peptide 3 (82 aa)
GAGLAVHRRVAERAGEREGPDEEVAVGEADLDAATSGLEVTGVSRLPMKGSPLMGCTTWYVGCVQRHKNHTYQILPLSQFTL*

>peptide 4 (43 aa)
MLIIQPSLPKRGFVIEITMAKSLRMYYAGKLITPFIFEIFHIS*

>peptide 5 (37 aa)
MQANLLLPSSLKFFTFHSTTMCLIYRGITTIQYYIAN*

>peptide 6 (28 aa)
MLSLPAKKNGCETAFLATALEIKVCDLYK

Sequence

>CNT30555733
GGGCGCCGGCCTGGCCGTGCACCGGCGTGTTGCGGAGCGGGCCGGTGAGCGCGAAGGGCCCGACGAGGAGGTAGCCGTGGGCGAGGCCGACCTCGATGCC
GCGACCAGCGGGCTGGAGGTCACCGGCGTCTCCAGGCTGCCGATGAAGGGGTCGCCATTGATGGGCTGCACCACCTGGTACGTTGGCTGTGTACAACGCC
ACAAGAATCACACATATCAGATACTCCCTCTGTCCCAATTTACTCTTTAAGATTCATACTCCCTCTGTCTCAAAATGGTTATCATAAAGAATTATTACTT
ATCCCATCAATCACTTCTAATTTAAATTTCTATCTTTCCTACCCTTAACCATCCTCCTACATCCAACTATACAATATTTAATTAGGAGTATTATAGTTTT
TTTTTCTCAAACCTTAATCTATGCTAAATTATCTAAAACGACAGGTAATATGAGACGAAGGGAGTAAATGTTTCATTTATCGTTCCATCAGAAGTAGACA
CGTGTAAATACACACCACCATATATATTTCTTTTAGATAATACTATATTTCAATTCGGCTTCTGCGTCAAGATGTATCCGGCCTACAGACGCCGATATAG
TCACGCTCACACAAATAAAGCTATTTAATTAAGCTCTAGAAAACGTACGCTCTAGTTTCTTGCATATATTATGGACTTATGGTTTACACTTATCATATAG
CTAGAACTTATACAAAGTTAACTATAAATTAATGCATCCAATTTTGGCTAAATTAGTGTAACTATATCTTCTAAAATCGTCATGCTAATAATCCAACCCT
CTCTCCCAAAAAGGGGATTTGTGATCGAAATAACGATGGCAAAAAGTTTAAGGATGTACTATGCAGGCAAACTTATTACTCCCTTCATCTTTGAAATTTT
TCACATTTCATAGTACTACGATGTGTCTAATCTACAGAGGGATTACAACAATTCAATATTATATTGCTAATTGAGGAAATAAACTAGTGAACAGAGCAAT
AAAAATACAACAAAATGAAAAACGATTATGTCTGAAATCTACCATCTGATTTTAATTAACAGAGCTTGTTCTTGAGAAACGTGCAAGTTTTACACTAGCT
TTGATGAAGCGAAATGGGAAATCTCTCAATGCTCTTTAGCAGTCTAGCTAGCTCTACTGACCTTCTCAGACTGGATGGCCTTGACTGTGAAGCGGGGCCT
CCTTGTCAGCGAAGCACCAGACAGCCCCCTCGGCTTGGAGCACACCAAGCTGCTCTTCATCAGCTGGCTCGCCATGGGAGCATAAGCAGTGGCCATCTCT
CTCCTCTCGTCTCTTCCTTTCTCTCCCTAGCTAGATGCTCTCTCTCCCGGCCAAAAAAAATGGATGTGAAACAGCCTTCTTGGCAACTGCCCTAGAAATT
AAAGTTTGTGATCTTTACAAGC