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Detailed information on CNT30555732


BLAST search results

BLAST vs Swiss-Prot:
sp|P18566|RBS2_ORYSJ, E-value = 1e-111

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30520812Oryza glaberrimaSetaria italica42.1163.8381.18510forward
CNT30257738Oryza glaberrimaAvena sativa42.1175.4480.59510forward
CNT30115461Oryza glaberrimaOryza nivara50.4590.2599.35611forward

Expression of CNT30555732

Peptides detected in this lncRNA

>peptide 1 (29 aa)
MHALQPMLIHTYVHTYTADVDTNKMKKKN*

>peptide 2 (50 aa)
MHLILPPLLTLPKPELVERRLTGRPAVDLSPWNGATEVAEEAITVGAIAT*

>peptide 3 (46 aa)
NNAMHVLPHIIEMETRGIKFGLSIVLHISIVFDDLYNIFITMCMCI*

>peptide 4 (54 aa)
MKLINCTCLTLSKPMMRTNASGYAFLASSSSLSTWVASVHPNMGSFHMVQYLPS*

Sequence

>CNT30555732
CAACAATGCTATGCATGTCCTACCACACATAATTGAAATGGAAACCAGAGGTATCAAGTTTGGTCTGAGTATAGTATTACATATAAGTATCGTTTTTGAC
GATTTGTACAATATATTTATTACGATGTGTATGTGCATATGATTAGCCTGGTGCTAGCATTCACATATGCATGCTCTTCAACCTATGTTGATACATACAT
ATGTACATACATACACAGCTGATGTTGACACAAACAAGATGAAAAAAAAAAACTGAAGCAACAAACTGGGAAAGGGGAAACCAATGCAAGGTGGCCCGAT
TCGAACGTTCAAAGCTGCCAAAACCGAATAGATCAATCGAGTCTCCTCTGTATAGAGCTCACGAGTGAGCTTGCTGGCTTGCCAACTAGCTTAGTTTCCG
CCGGACTCCTCGCAACCCGGGGGCTTGTAGGCGATGAAGCTAATCAACTGCACCTGCCTGACGTTGTCGAAGCCGATGATGCGAACAAATGCATCTGGAT
ATGCCTTCTTGGCCTCCTCGAGCTCCTTGAGCACCTGGGTGGCATCAGTGCATCCGAACATGGGCAGCTTCCACATGGTCCAGTACCTGCCATCATAGTA
CCCAGGAGACCTGTGGTTCTCACGGTAGACGAACCCGACCTTACTAAACTCGAGCTCCTTGAGCACCTGGGTGGCATCAGTGCATCCGAACATGGGCAGC
TTCCACATGGTCCAGTACCTGCCATCATAGTACCCAGGAGACCTGTGGTTCTCACGGTAGACGAACCCGACCTTACTAAACTCGAGGCAAGGCACCCATT
TGGACCGGAGCAGGTACTCGATCTGCTTCAAGAGGTCCTCGACCGTGAGCGGTGGCAGGTACGATAGGGTCTCGAACTTCTTGATGCCCTCAATTGGCCA
CACCTGAATAAATAATGTAAAAATTTAAATCAGGTTAATTTGAATTTCGTAACATGAGTTAATTTGATCCTTGACTTTAAAGGAGAAGCCTGAGGAGGTA
TATATCATATATACCTGCATGCACTTGATCCTTCCGCCATTGCTGACGTTGCCGAAGCCCGAGTTGGTGGAGCGGCGGCTGACGGGGAGGCCGGCGGTGG
ACTTGAGCCCTTGGAATGGAGCCACGGAGGTGGCCGAGGAGGCCATCACGGTGGGGGCCATAGCCACGTAGTTAGCTAGCTAGCTTACTGGCTAGTAGTA
GTAGAGTATGT