CANTATAdb - search

Detailed information on CNT30555725

BLAST search results

BLAST vs Swiss-Prot:
sp|P18566|RBS2_ORYSJ, E-value = 3e-79

BLAST vs NONCODE:
NONORUT002193, E-value = 2e-157

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30672821	Oryza glaberrima	Setaria viridis	39.46	38.74	85.03	294	forward
CNT30658325	Oryza glaberrima	Triticum dicoccoides	41.48	42.8	86.73	309	forward
CNT30597241	Oryza glaberrima	Oryza meridionalis	80.54	68.89	98.83	600	forward
CNT30104669	Oryza glaberrima	Oryza rufipogon	86.85	78.05	99.07	647	forward

Expression of CNT30555725

Peptides detected in this lncRNA

>peptide 1 (38 aa)
MPHPTTYSRSRYHSYIKSERDQVKQKQKQSTAGKIKRR*

>peptide 2 (54 aa)
MKLMSCTCLTLSKPMIRTNASGYAFLASSSSLSTWVASVHPNMGSFHMVQYLPS*

Sequence

>CNT30555725
CGATGAACAACAGAAGCATGATTTTTTAATTCCATGATCAAATTTCATTGTCGACGAATTGATTGTTGGACACATATGCTCTAGGATTCACATCCATCTC
ATACCCTTTGTATAAATATATATAGCCGGAGCTTTCATAGATTTCATTCACATATGCCTCACCCAACAACATATAGTCGTAGCAGATACCACTCTTACAT
CAAGTCAGAGAGAGATCAGGTGAAACAAAAACAAAAGCAGAGCACGGCCGGTAAAATCAAAAGACGATGAACAAACTGGGAACACACGAAACAAGGCTAT
ATATGACGATGACGGCTTAGTTGCCACCAGACTCCTCGCAGCCCGGGGGCTTGTAGGCGATGAAGCTGATGAGCTGCACCTGCCTGACGTTGTCGAAGCC
GATGATACGGACGAATGCATCAGGGTACGCCTTCTTGGCCTCCTCGAGCTCCTTGAGCACCTGGGTGGCGTCGGTGCACCCGAACATGGGCAGCTTCCAC
ATGGTCCAGTACCTGCCGTCGTAGTATCCGGGGGACCTGTGGTTCTCACGGTAGACGAATCCGACCTTGCTGAACTCGAGGCAGGGCACCCACTTGGAAC
GGAGCAGGTACTCGATCTGCTTCAGGAGGTCCTCCACGGTGAGCGGGGGCCATCTCTGCAGCTCACCAAGCTCTCTCCTTCTTTGCTCGAGTACTTCTTG
AGATGCACTGCTCTGCACACAGGCTCCCGCGGTACGTATAAATAG