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Detailed information on CNT30555721


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONORUT004130, E-value = 0.0

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30597211Oryza glaberrimaOryza meridionalis26.7153.8394.16274forward
CNT30108241Oryza glaberrimaOryza longistaminata59.7584.6797.39613forward
CNT30604653Oryza glaberrimaOryza punctata56.5349.8386.55580forward

Expression of CNT30555721

Peptides detected in this lncRNA

>peptide 1 (33 aa)
MNHITALDDFWKCYYVPFQLDTTTAEGYICVLF*

>peptide 2 (32 aa)
MYSPYACVCFFLLFFDGQLCMYSQFLLLRLTL*

Sequence

>CNT30555721
ACACTACTGGAATTCCACGGGGTCCCTAGGGTTTTCAAATGTTCCCTAGAGCCCTAATTAGAACCCAATGGGATAATAAGTTCCCTAGAGCCGAAACTAA
AACTCAAGGGAACTGAGATGATCCCTAGAGTTTTTGCTTGCTCCTAGGGAAACTAGTACAGTTGGCATTGATAGGAGAACCACGGTGGCAGGGTCCACTG
TCTTTTTCAGAAACCAACCACGTGGAAAGGTTGTAATATTTTCTCCCGCCTTGTGAATCCAAAATTTGGACTGTGCACCATATTCTCTTTCCATTGGAAA
GTAATAAAGTACCCCAAACTGCTAAACTTTCCTCTTTGTTCTTCCTTCAACATGTTCTTTCATCTCTTCCTCCCCAAATCAACTCCCTCTCCAGTCTCCA
CCACCAAATCTACCCTCAAGTAGTAGAGATCGACAGGAGCTTCGACCTTCGAGGGTGGTTGCAGCAGCACTCCTGAAGGCCGTGGTGGGCGTGGGCTGAT
TGCATCTGTTTGCGGCTGAGAGGCAACGCCGGGACAGGGGTGAATCAAGGCCACGGCGACCTGTGCAGCGTGGTGTTGCCGAGCTGCTCTCTAGTTAGCA
TTTAGCAAAGGTACTCGAGCAGATATTTTCCTGTGCATATTTTGAAGTTTTGATTTTTGATGGATTCTGTGCTTGATGCAGATCAGTAAGGCCGAGAAGT
CAAGAACTTGAGCTACGCTTGCAAAACTTGATATATGAATCATATTACTGCGCTTGATGACTTCTGGAAGTGCTATTACGTACCATTTCAATTGGATACA
ACTACTGCAGAAGGCTATATTTGTGTTTTATTTTGACTTTTGAGAGAGCAAAGCCACAATCTATTAAGTGTTCGTCAATTTTCAACTCTGGATGTACTCT
CCCTATGCGTGTGTGTGTTTTTTTCTTTTGTTTTTCGATGGGCAACTCTGCATGTACTCGCAATTTTTACTGTTGAGATTAACTTTGTAATGCAGTATAT
ATATTTTTTGTTCAAGCAAGTTGATG