Detailed information on CNT30555717


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONORUT005011, E-value = 4e-93

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30369662Oryza glaberrimaOryza glumipatula49.0113.1686.93199forward
CNT30105015Oryza glaberrimaOryza longistaminata32.768.6992.48133reverse complement
CNT30578417Oryza glaberrimaOryza barthii100.2586.0592.14407forward

Expression of CNT30555717

Peptides detected in this lncRNA

>peptide 1 (29 aa)
EESRSCRIGDEEEIEIELEMEMEIILETE*

>peptide 2 (39 aa)
MDRVLRSQLYLLIRIFCVICIEICLGKSLPQRLMYLRVC*

Sequence

>CNT30555717
GGAGGAATCCCGGAGTTGTCGGATCGGAGATGAAGAAGAAATCGAGATCGAGTTAGAGATGGAGATGGAGATCATCCTGGAAACAGAGTAAAGATCGGCT
GCAGTCCGAATCGGCTATGGCTAAGATCGGCAGGGTACGAGTCGGACAGGGTTAGCCGATTGAGCTGAATCCGACAATATGACATTGCATATGTTGTCGG
GTTAGATTGATGTGCTTCATGATGATTGCCACGCATGGACAGAGTCCTGAGAAGCCAGTTGTATCTATTAATTAGGATATTTTGTGTAATTTGCATAGAG
ATATGTTTGGGCAAAAGTCTGCCGCAAAGACTTATGTATCTTAGAGTTTGTTAGAGATAAGAGTCATGCCCGATATGGACATATTTTGTAATCTCAGGTA
TAAATA