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Detailed information on CNT30555706


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9BBU3|PSBA_LOTJA, E-value = 3e-166

BLAST vs NONCODE:
NONMTRT000175, E-value = 0.0

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30692810Oryza glaberrimaOryza sativa10054.1999.27685forward
CNT30378681Oryza glaberrimaArabidopsis thaliana80.1557.0191.07549forward
CNT3021612Oryza glaberrimaCitrullus lanatus12.742.8696.5587forward
CNT30198744Oryza glaberrimaPisum sativum52.2698.3589.39358forward
CNT30300480Oryza glaberrimaTriticum aestivum10052.2996.2685forward
CNT30391503Oryza glaberrimaTriticum turgidum37.6651.695.35258forward
CNT3089384Oryza glaberrimaVigna radiata82.1969.3390.05563forward
CNT30540528Oryza glaberrimaBrassica napus98.9856.4591.89678forward
CNT30145403Oryza glaberrimaMedicago truncatula36.6493.3192.83251forward
CNT30441777Oryza glaberrimaAegilops tauschii27.1533.0497.31186forward
CNT30598581Oryza glaberrimaFraxinus excelsior17.6634.2893.39121forward
CNT3018289Oryza glaberrimaZea mays100.1526.4496.06686forward
CNT30605440Oryza glaberrimaGossypium raimondii31.3952.5789.77215forward
CNT3067750Oryza glaberrimaLeersia perrieri14.0135.9697.9296forward
CNT30655381Oryza glaberrimaRosa chinensis36.3546.5492.77249forward
CNT30626343Oryza glaberrimaDaucus carota44.2374.4592.41303forward
CNT30684658Oryza glaberrimaTriticum urartu57.5256.7797.72394forward
CNT30360185Oryza glaberrimaLactuca sativa78.9875.4592.61541forward
CNT3058320Oryza glaberrimaAmborella trichopoda77.0875.9789.2528forward
CNT30147990Oryza glaberrimaBrachypodium distachyon82.4837.3293.1565forward
CNT30102095Oryza glaberrimaOryza rufipogon20.1558.9799.28138forward

Expression of CNT30555706

Peptides detected in this lncRNA

>peptide 1 (57 aa)
MQQQSKDAYPDGNSVPTHDPYNKLHQVRSVEQLAHKDRHCITTHQQMQLPKLGKSAIR

>peptide 2 (42 aa)
MSGHNIISLFLLTKSVTLISRFVFSGFPDQTRGYQGTMHSTE*

Sequence

>CNT30555706
AGTATTAATAACGCGACCTTGGCTATCAACTACAGATTAGTTGAAATTGAATCCGTTTAGATTGAAAGCCATAGTACTAATACCTAAAGCAGTGAACCAA
ATCCCTACTACAGGCCAAGCAGCCAAGAAGAAGTGTAAAGAACGAGAGTTGTTAAAACTAGCATATTGGAAGATTAATCGGCCAAAATAACCATGAGCGG
CCACAATATTATAAGTCTCTTCCTTTTGACCAAATCTGTAACCCTCATTAGCAGATTCGTTTTCAGTGGTTTCCCTGATCAAACTAGAGGTTACCAAGGA
ACCATGCATAGCACTGAATAGGGAACCGCCGAATACACCAGCTACACCTAACATGTGAAATGGATGCATAAGGATGTTATGCTCTGCCTGGAATACAATC
ATAAAGTTGAAAGTACCAGATATTCCTAAAGGCATACCATTAGAGAAACTTCCTTGACCAATAGGGTAAATCAAGAAAACAGCAGTAGCAGCTGCAACAG
GAGTTGAATATGCAACAGCAATCCAAGGACGCATACCCAGACGGAAACTCAGTTCCCACTCACGACCCATATAACAAGCTACACCAAGTAAGAAGTGTAG
AACAATTAGCTCATAAGGACCGCCATTGTATAACCACTCATCAACAGATGCAGCTTCCCAAATTGGGTAAAAGTGCAATCCGATC