CANTATAdb - search

Detailed information on CNT30555688

BLAST search results

BLAST vs Swiss-Prot:
sp|P13951|RBS_SINAL, E-value = 1e-22

BLAST vs NONCODE:
NONORUT002193, E-value = 0.0

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30180392	Oryza glaberrima	Secale cereale	35.97	14.75	85.51	214	forward
CNT30436135	Oryza glaberrima	Aegilops tauschii	36.64	55.9	85.32	218	forward
CNT30685518	Oryza glaberrima	Triticum urartu	36.13	48.31	85.58	215	forward
CNT30597252	Oryza glaberrima	Oryza meridionalis	63.36	82.86	98.94	377	forward

Expression of CNT30555688

Peptides detected in this lncRNA

>peptide 1 (38 aa)
MPHPTTYSRSRYHSYIKSERDQVKQKQKQSTAGKIKRR*

>peptide 2 (63 aa)
MKLMSCTCLTLSKPMIRTNASGYAFLASSSSLSTWVASVHPNMGRAPTWNGAGTRSASGGPPR*

Sequence

>CNT30555688
GAAGCATGATTTTTTAATTCCATGATCAAATTTCATTGTCGACGAATTGATTGTTGGACACATATGCTCTAGGATTCACATCCATCTCATACCCTTTGTA
TAAATATATATAGCCGGAGCTTTCATAGATTTCATTCACATATGCCTCACCCAACAACATATAGTCGTAGCAGATACCACTCTTACATCAAGTCAGAGAG
AGATCAGGTGAAACAAAAACAAAAGCAGAGCACGGCCGGTAAAATCAAAAGACGATGAACAAACTGGGAACACACGAAACAAGGTGGGAGACATCATCGA
ATCAGAGATGAACAATTAAACGAGGCTATATATGACGATGACGGCTTAGTTGCCACCAGACTCCTCGCAGCCCGGGGGCTTGTAGGCGATGAAGCTGATG
AGCTGCACCTGCCTGACGTTGTCGAAGCCGATGATACGGACGAATGCATCAGGGTACGCCTTCTTGGCCTCCTCGAGCTCCTTGAGCACCTGGGTGGCGT
CGGTGCACCCGAACATGGGCAGGGCACCCACTTGGAACGGAGCAGGTACTCGATCTGCTTCAGGAGGTCCTCCACGGTGAGCGGCGGCGAAGGAG