CANTATAdb - search

Detailed information on CNT30555679

BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30577275	Oryza glaberrima	Oryza barthii	99.81	27.93	94.35	531	forward

Expression of CNT30555679

Peptides detected in this lncRNA

>peptide 1 (33 aa)
MGDRPGNSSWVHTSEDKVCRKDMCWSVRAVYDL*

>peptide 2 (57 aa)
MKAARYKWARPGRGGSLQNGIRADSRGFTGACMVRMAGVDREWLHSMAHALALDTWT*

Sequence

>CNT30555679
GTGTAACATCCTGGCCTAGGGCTTAATAGGATTAATAGAATACTCATATCAACAAGTTGTAACTTCTTTTCCGGAAGCCAATCTCCAAAGAACTCCAGGG
TTAAGCGTGCTTGGCCTGGAGCAATTTGGGATGGGTGACCGACCGGGAAATTCTTCCTGGGTGCACACGAGTGAGGACAAAGTGTGTAGAAAAGACATGT
GTTGGTCTGTGAGGGCAGTCTATGACCTATGAAAGCTGCTAGATATAAGTGGGCCCGGCCTGGGAGAGGCGGGTCGTTACAAAATGGTATCAGAGCCGAC
TCTCGCGGTTTCACGGGCGCGTGCATGGTGCGCATGGCTGGTGTAGACCGGGAGTGGTTACACAGCATGGCACATGCGCTGGCACTGGACACATGGACGT
AGCCAAGAGAGGACGTTCCTGGCCTGGGGTTGATCGACGGGGGCGTCGATCTCTCTTGAGGGGGTGAGGGTGTAACATCCTGGCCTAGGGCTTAATAGGA
TTAATAGAATACTCATATCAACAAGTTGCAAC