Detailed information on CNT30555662


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30597179Oryza glaberrimaOryza meridionalis10096.3698.3529forward
CNT30371482Oryza glaberrimaOryza glumipatula10096.0198.87529forward
CNT30104732Oryza glaberrimaOryza rufipogon91.6898.7898.35485forward
CNT30578566Oryza glaberrimaOryza barthii99.05100100524forward

Expression of CNT30555662

Peptides detected in this lncRNA

>peptide 1 (72 aa)
RFQLLLLLDFFILWQQWRRVAGCRRPETGEQSRRGGAAARDEQEEAAERRVVAHPRAAVLVRAERWVSPGSG*

>peptide 2 (41 aa)
PLPATSSFRFLYPVAAVAKGSWLPAPRNRRAEPAWWGGSEG*

>peptide 3 (59 aa)
MSRRKLQSDEWWRIHARPCWYGRSDGYRRVVAEDIVADRSEREQHTRMCKNLSNNTSKL*

Sequence

>CNT30555662
ACCGCTTCCAGCTACTTCTTCTTTTAGATTTCTTTATCCTGTGGCAGCAGTGGCGAAGGGTAGCTGGTTGCCGGCGCCCAGAAACCGGCGAGCAGAGCCG
GCGTGGTGGGGCGGCAGCGAGGGATGAGCAGGAGGAAGCTGCAGAGCGACGAGTGGTGGCGCATCCACGCGCGGCCGTGTTGGTACGGGCGGAGCGATGG
GTATCGCCGGGTAGTGGCTGAAGACATCGTTGCTGATAGGTCTGAAAGGGAGCAGCACACCAGGATGTGCAAGAACCTATCAAACAACACTTCGAAGCTC
TGAGGTTTCAACTTCAGAGTTTACAACCCACACTCTGCTCCACATTTCATTTCTATCATGGGAGATGTCAAATAATTGTTGTAATGATTTGAGAAGACAA
GTAGAGAATAAATAAATGAGTACCCGAACATTATTCATGTACTCTGTAGTTGAATCCATCAGGAGAGAAAGATATTTTTCTCATAAACAGGGTTAATCGG
AAGTTAAAAATCAATAATGACAAAGAACA