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Detailed information on CNT30555659


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30697589Oryza glaberrimaOryza sativa78.28101.6297.13627forward
CNT30578587Oryza glaberrimaOryza barthii1008999.88801forward

Expression of CNT30555659

Peptides detected in this lncRNA

>peptide 1 (35 aa)
MQSCRTTRHQWSVHQQLAACQEAYCNPQRRLMMNR*

>peptide 2 (74 aa)
MSNNKTSVVSSSAAGSMSRSLLQSSTTTDDEQVTEMLLHWLLSPACAAACSSLLLLPGLWQWLSVLICDASTTT*

>peptide 3 (37 aa)
MYSSTVPFFVSCSVLSSRSATNIHSQGVLPLRSVRLR*

Sequence

>CNT30555659
AAAAAATTGCTCTGGTTTTCTGGTGGTTGTAGAGAGAAGATATATGGAGACCACAAATTGTCCCTCGTTACTGGTCCCTGAATAGGGACATGCTTGCTTT
GACTCCAATGGAACGCAATCAATTGTTCCAACCGGCTGGCCAGCAGTGACCGGGATGTTTTACTCCATCAAAAACACGGCGTGACCGTGCGAGTCAAGAA
GGAACACGCCAATACCTTATGTTCAGTTTGACAGCACGCTCGGATGGATGTACTCCAGTACCGTGCCATTTTTTGTTTCCTGTAGTGTTCTGAGCAGCCG
GTCGGCGACAAACATACACAGTCAAGGTGTTCTGCCGCTTCGTTCTGTCCGCCTAAGGTAAAAACATAATGGAGCTGATTTTGAAAAGAGAACTACTGCC
GGGCGAGGATGGTCTGGATGGATGGATCAACTTTGAAAAGAAATAAGATGTGTGTTAAACATCTCATTCTTTTGCTGATGCGCTGAAACGAGGTGCATAT
GCAGTCATGTCGAACAACAAGACATCAGTGGTCAGTTCATCAGCAGCTGGCAGCATGTCAAGAAGCTTATTGCAATCCTCAACGACGACTGATGATGAAC
AGGTGACGGAGATGTTGCTGCACTGGCTGCTGTCACCGGCGTGTGCCGCAGCCTGCAGCTCGCTGCTGCTGCTGCCCGGACTCTGGCAATGGCTGTCGGT
GCTAATCTGTGATGCTTCGACGACGACATGATCATCAGCTGATGCCGCAGGGCCCTTGCAGCAGGTGTGCTGGCCGTAGTAGACCACCGTGTACATGACG
G