Detailed information on CNT30555645


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30697494Oryza glaberrimaOryza sativa46.665.5797.08240forward
CNT30450733Oryza glaberrimaSaccharum spontaneum10.872091.0756forward
CNT30371486Oryza glaberrimaOryza glumipatula58.2560.36100300forward
CNT30106587Oryza glaberrimaOryza longistaminata56.3174.7494.14290forward
CNT30104741Oryza glaberrimaOryza rufipogon48.7476.0697.21251forward
CNT30604867Oryza glaberrimaOryza punctata43.1158.1283.33222forward

Expression of CNT30555645

Peptides detected in this lncRNA

>peptide 1 (36 aa)
MLSHQPPNRRKNRNRTGPEPNRTGRGRRSQPTSERPR

>peptide 2 (56 aa)
MIHSRATKIHNHDKLNNSMDLTRAEHTKIHSFIHLIKANETSFLLAIKNTDGQPHS*

>peptide 3 (79 aa)
MRAPPLSSSSSRRSCRRRGCRSHRRSRRHHGRRRSSGTQHPAPPCFPTNPRTEEKTEIEPDPNRTEPGGGGEANPPLRDH

Sequence

>CNT30555645
TTTTGACTGGTTATGATTCATTCCAGGGCAACCAAGATTCACAACCATGACAAATTAAATAATTCGATGGATTTGACGAGAGCGGAGCACACTAAGATTC
ATTCATTCATTCATTTGATCAAAGCAAACGAGACGAGCTTTCTTCTTGCGATCAAAAACACAGATGGGCAACCACACAGTTAACACAAACTAGATAGTTC
CACACAAAACTAACGATGATAACGATCGGATGATGATGATGGTAGCTCGATTAGATAGATAGATAACTTGGCCATGAGGGCCCCACCGCTCAGTTCCTCC
AGTTCCCGTCGGAGTTGCCGCCGCCGCGGCTGCCGTAGCCACCGCCGTAGCCGCCGCCACCACGGCCGCCGACGAAGCAGCGGTACTCAACATCCGGCGC
CGCCATGCTTTCCCACCAACCCCCGAACCGAAGAAAAAACCGAAATCGAACCGGACCCGAACCGAACCGAACCGGGAGGGGGAGGAGAAGCCAACCCACC
TCTGAGAGACCACGG