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Detailed information on CNT30555640

BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30697657	Oryza glaberrima	Oryza sativa	98.22	94.53	99.64	553	forward
CNT30104664	Oryza glaberrima	Oryza rufipogon	100	90.22	99.64	563	forward
CNT30118039	Oryza glaberrima	Oryza nivara	100	86.62	99.47	563	forward

Expression of CNT30555640

Peptides detected in this lncRNA

>peptide 1 (59 aa)
PGFAPELTWGRGSFIIARSAPRRCVWSWFGWGLLNRRCLRRIKPPSTFAKQSERERGRS*

>peptide 2 (33 aa)
RLRPRINVGSRFFHHRSICAPSMCVVVVWVGVA*

Sequence

>CNT30555640
CCCGGCTTCGCCCCCGAATTAACGTGGGGTCGAGGTTCTTTCATCATCGCTCGATCTGCGCCCCGTCGATGTGTGTGGTCGTGGTTTGGGTGGGGGTTGC
TTAACCGGCGCTGTTTGCGGCGGATCAAGCCTCCTTCGACCTTTGCGAAGCAGTCTGAGCGTGAGCGGGGAAGGAGTTGAAGACAGGCATTGAGAAGGGT
GCTCCAGATCCAGTGGATCTTTTCCGATCCAGGTATCAGAGTGCTCGGGTAAGCTCAAGGTCATTTACAATTGGAATGCTTTTGTCTGATTTCTTGAGTT
GCTCTTGGGTGAAAACTTGATGCTAGATAAGAGCTGTTCCCACTCCATGAAATCGAGGTTGTTTCTCCTCTAGATGGCTTCTGTAGTAAGCAACAAACGT
GCAAGTATTGAATATCATTATTGATGATATATAGTAATATTATTATCTAGTAAGTTAGTAAGAAGAGAATAAATGGGAACTTACGTCATGTATGATTTTG
GATTTAAAGCAACCTTGCTCTTTGTTGTATTGCAATAATGTTATCAATCCTCTTTCATCGCCA