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Detailed information on CNT30555612


BLAST search results

BLAST vs Swiss-Prot:
sp|P18566|RBS2_ORYSJ, E-value = 1e-91

BLAST vs NONCODE:
NONORUT002193, E-value = 0.0

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30672909Oryza glaberrimaSetaria viridis33.5949.6584.62351forward
CNT30521106Oryza glaberrimaSetaria italica35.1250.6284.47367forward
CNT30180865Oryza glaberrimaSecale cereale35.652.6286.83372forward
CNT30290030Oryza glaberrimaTriticum aestivum36.5675.7986.91382forward
CNT30221752Oryza glaberrimaHordeum vulgare35.9856.287.77376forward
CNT30386515Oryza glaberrimaTriticum turgidum36.5627.687.43382forward
CNT30436411Oryza glaberrimaAegilops tauschii35.7956.7587.43374forward
CNT30248284Oryza glaberrimaAvena sativa35.7949.887.17374forward
CNT30658347Oryza glaberrimaTriticum dicoccoides36.5670.7487.43382forward
CNT30136970Oryza glaberrimaLolium perenne35.4157.986.22370forward
CNT30681645Oryza glaberrimaTriticum urartu35.7925.5687.17374forward
CNT30721860Oryza glaberrimaTriticum spelta34.0762.0285.96356forward
CNT30351770Oryza glaberrimaEragrostis tef32.2534.5385.46337forward
CNT30371423Oryza glaberrimaOryza glumipatula53.8881.8399.29563forward
CNT30150944Oryza glaberrimaBrachypodium distachyon33.4952.488.57350forward
CNT30578612Oryza glaberrimaOryza barthii65.1760.21100681forward
CNT30118102Oryza glaberrimaOryza nivara54.2649.9699.47567forward
CNT30604884Oryza glaberrimaOryza punctata24.8838.1287.69260forward
CNT30556975Oryza glaberrimaPanicum hallii35.2246.0684.24368forward
CNT30551876Oryza glaberrimaOryza brachyantha33.9741.2894.65355forward

Expression of CNT30555612

Peptides detected in this lncRNA

>peptide 1 (38 aa)
MPHPTTYSRSRYHSYIKSERDQVKQKQKQSTAGKIKRR*

>peptide 2 (65 aa)
MCVGSVGNYLHAPDPAAIADVAEAGVAGAAGDGHAGGGLEPLEGSDGGGHLCSSPSSLLLCSSTS*

>peptide 3 (68 aa)
MHLILPPLLTLPKLELPERRAMGMPAVDLSPWKGATVGAISAAHQALSFFARVLLEMHCSAHRLPRYV*

>peptide 4 (54 aa)
MKLMSCTCLTLSKPMIRTNASGYAFLASSSSLSTWVASVHPNMGSFHMVQYLPS*

Sequence

>CNT30555612
CGATGAACAACAGAAGCATGATTTTTTAATTCCATGATCAAATTTCATTGTCGACGAATTGATTGTTGGACACATATGCTCTAGGATTCACATCCATCTC
ATACCCTTTGTATAAATATATATAGCCGGAGCTTTCATAGATTTCATTCACATATGCCTCACCCAACAACATATAGTCGTAGCAGATACCACTCTTACAT
CAAGTCAGAGAGAGATCAGGTGAAACAAAAACAAAAGCAGAGCACGGCCGGTAAAATCAAAAGACGATGAACAAACTGGGAACACACGAAACAAGGTGGG
AGACATCATCGAATCAGAGATGAACAATTAAACGAGGCTATATATGACGATGACGGCTTAGTTGCCACCAGACTCCTCGCAGCCCGGGGGCTTGTAGGCG
ATGAAGCTGATGAGCTGCACCTGCCTGACGTTGTCGAAGCCGATGATACGGACGAATGCATCAGGGTACGCCTTCTTGGCCTCCTCGAGCTCCTTGAGCA
CCTGGGTGGCGTCGGTGCACCCGAACATGGGCAGCTTCCACATGGTCCAGTACCTGCCGTCGTAGTATCCGGGGGACCTGTGGTTCTCACGGTAGACGAA
TCCGACCTTGCTGAACTCGAGGCAGGGCACCCACTTGGAACGGAGCAGGTACTCGATCTGCTTCAGGAGGTCCTCCACGGTGAGCGGTGGCAGGTAGGAG
AGGGTCTCGAACTTCTTGATGCCCTCAATCGGCCACACCTGAATGAATAAACGATAATTGAGTTGTTGGTTAATGTTGGTTAAGAAGAAGAAGAAGAAGA
AGAATGTGTGTTGGATCAGTAGGTAATTACCTGCATGCACCTGATCCTGCCGCCATTGCTGACGTTGCCGAAGCTGGAGTTGCCGGAGCGGCGGGCGATG
GGCATGCCGGCGGTGGACTTGAGCCCCTGGAAGGGAGCGACGGTGGGGGCCATCTCTGCAGCTCACCAAGCTCTCTCCTTCTTTGCTCGAGTACTTCTTG
AGATGCACTGCTCTGCACACAGGCTCCCGCGGTACGTATAAATAG