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Detailed information on CNT30555607


BLAST search results

BLAST vs Swiss-Prot:
sp|O49879|CF0_SOLLC, E-value = 2e-14

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30697910Oryza glaberrimaOryza sativa55.8368.0386.35249forward
CNT30578541Oryza glaberrimaOryza barthii73.9960.1198.79330forward

Expression of CNT30555607

Peptides detected in this lncRNA

>peptide 1 (36 aa)
LEDKDLKFTKFTHPTWKGVTYLIVSNVKDLQVPASN*

>peptide 2 (45 aa)
MERSHLSDCFQRQGSPSSCKQLEIWVSFHQSNCHLNLLPQVNSLP*

Sequence

>CNT30555607
GACTTGAGGACAAGGACTTGAAGTTTACGAAGTTTACTCATCCAACATGGAAAGGAGTCACTTATCTGATTGTTTCCAACGTCAAGGATCTCCAAGTTCC
TGCAAGCAACTAGAGATCTGGGTATCTTTCCATCAATCAAATTGCCACTTAAATCTATTGCCTCAAGTGAACAGCCTTCCTTGATGCTATCAGGATGGGA
TCGAACCACTCAAGTTATTGTAAGAGAGATCAAAGAGTTGCAAATTCCTAGCAGCGGTACATATTGATGGTGGAATATCTCCAGAGAGTTTGTTTCTGGA
GGCCTTGAAAGTGAGAGTTTCCCCAAGGTATGGGCCCTTCAATGCTGTTGAAACTGAGGTCAAGGAATTCTATATGAAGAGGAAGCAAAGGATCAGATCC
AAGACTTGTAAAGTTATTGTGCGACATGTTCAAGAGGAGAAATTCC