Detailed information on CNT30555604


BLAST search results

BLAST vs Swiss-Prot:
sp|A2Y205|RBS1_ORYSI, E-value = 3e-51

BLAST vs NONCODE:
NONORUT002193, E-value = 0.0

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30371385Oryza glaberrimaOryza glumipatula67.910096.1641forward
CNT30104624Oryza glaberrimaOryza rufipogon69.2887.7998.17654forward
CNT30578557Oryza glaberrimaOryza barthii10080.27100944forward

Expression of CNT30555604

Peptides detected in this lncRNA

>peptide 1 (73 aa)
MCVGSVGNYLHAPDPAAIADVAEAGVAGAAGDGHAGGGLEPLEGSDGGGRRRHHGGGHLCSSPSSLLLCSSTS*

>peptide 2 (74 aa)
MKLMSCTCLTLSKPMIRTNASGYAFLASSSSLSTWVASVHPNMGSFHMVLHGERWQVGEGLELLDALNRPHLNE*

>peptide 3 (76 aa)
MHLILPPLLTLPKLELPERRAMGMPAVDLSPWKGATVVADDAITEGAISAAHQALSFFARVLLEMHCSAHRLPRYV*

>peptide 4 (38 aa)
MPHPTTYSRSRYHSYIKSERDQVKQKQKQSTAGKIKRR*

Sequence

>CNT30555604
CGATGAACAACAGAAGCATGATTTTTTAATTCCATGATCAAATTTCATTGTCGACGAATTGATTGTTGGACACATATGCTCTAGGATTCACATCCATCTC
ATACCCTTTGTATAAATATATATAGCCGGAGCTTTCATAGATTTCATTCACATATGCCTCACCCAACAACATATAGTCGTAGCAGATACCACTCTTACAT
CAAGTCAGAGAGAGATCAGGTGAAACAAAAACAAAAGCAGAGCACGGCCGGTAAAATCAAAAGACGATGAACAAACTGGGAACACACGAAACAAGGTGGG
AGACATCATCGAATCAGAGATGAACAATTAAACGAGGCTATATATGACGATGACGGCTTAGTTGCCACCAGACTCCTCGCAGCCCGGGGGCTTGTAGGCG
ATGAAGCTGATGAGCTGCACCTGCCTGACGTTGTCGAAGCCGATGATACGGACGAATGCATCAGGGTACGCCTTCTTGGCCTCCTCGAGCTCCTTGAGCA
CCTGGGTGGCGTCGGTGCACCCGAACATGGGCAGCTTCCACATGGTCCTCCACGGTGAGCGGTGGCAGGTAGGAGAGGGTCTCGAACTTCTTGATGCCCT
CAATCGGCCACACCTGAATGAATAAACGATAATTGAGTTGTTGGTTAATGTTGGTTAAGAAGAAGAAGAAGAAGAAGAATGTGTGTTGGATCAGTAGGTA
ATTACCTGCATGCACCTGATCCTGCCGCCATTGCTGACGTTGCCGAAGCTGGAGTTGCCGGAGCGGCGGGCGATGGGCATGCCGGCGGTGGACTTGAGCC
CCTGGAAGGGAGCGACGGTGGTGGCCGACGACGCCATCACGGAGGGGGCCATCTCTGCAGCTCACCAAGCTCTCTCCTTCTTTGCTCGAGTACTTCTTGA
GATGCACTGCTCTGCACACAGGCTCCCGCGGTACGTATAAATAG