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Detailed information on CNT30555589


BLAST search results

BLAST vs Swiss-Prot:
sp|P29766|RL8_SOLLC, E-value = 1e-56

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30672571Oryza glaberrimaSetaria viridis19.279.7688.36335forward
CNT30393881Oryza glaberrimaTriticum turgidum6.0726.396.23106forward
CNT30587002Oryza glaberrimaMusa acuminata8.5455.1991.95149forward
CNT30511330Oryza glaberrimaSolanum lycopersicum12.8454.985.71224forward
CNT30441013Oryza glaberrimaAegilops tauschii8.7142.3496.05152forward
CNT30652852Oryza glaberrimaRosa chinensis11.2949.587.31197forward
CNT30624277Oryza glaberrimaDaucus carota16.9662.1882.43296forward
CNT30721746Oryza glaberrimaTriticum spelta20.2321.9595.47353forward
CNT30367313Oryza glaberrimaSorghum bicolor12.5538.5695.43219forward
CNT30596728Oryza glaberrimaOryza meridionalis20.9775.4698.36366forward
CNT30371441Oryza glaberrimaOryza glumipatula17.8876.4799.68312forward
CNT30646445Oryza glaberrimaCannabis sativa10.0350.7282.29175forward
CNT3054135Oryza glaberrimaAmborella trichopoda12.8937.0784.89225forward
CNT3024196Oryza glaberrimaPopulus trichocarpa12.7849.1283.86223forward
CNT30322486Oryza glaberrimaAsparagus officinalis15.4257.3687.36269forward
CNT30151099Oryza glaberrimaBrachypodium distachyon11.8653.9195.17207forward
CNT30104724Oryza glaberrimaOryza rufipogon40.3467.4398.58704forward
CNT30578591Oryza glaberrimaOryza barthii70.277.5898.21225forward
CNT30117466Oryza glaberrimaOryza nivara53.3583.3598.93931forward
CNT30725998Oryza glaberrimaLupinus angustifolius9.2877.1485.19162forward

Expression of CNT30555589

Peptides detected in this lncRNA

>peptide 1 (49 aa)
MHRQTISSTYATTILMVEQIESIHGQQYQVVHIQLYYNDRKNSRIIEQN*

>peptide 2 (33 aa)
MCWWLPPPWGCSTGFMATPRTLGQQFLFTRYLW*

>peptide 3 (30 aa)
MTTKTANIHHKCDQSTKQKARPYWNTCPLI*

>peptide 4 (66 aa)
MLNGVHGHTTHLRPAVPLHAVLVVGVSSLEHRLLSPATTSNLTDHGTAAAGDNLLGTRGELDPARK*

Sequence

>CNT30555589
GAGAACCAAGTGGAAGACTACTGACAATTACCATGAGCTAATTCAACAACTCAAGGATTAAATAACCAGGTAAAAACTTCTTTAGGTGGAATGTAGAATC
CAGACCATGACCACGAAAACTGCGAACATTCATCACAAATGTGACCAGAGTACCAAGCAAAAAGCACGACCATACTGGAATACATGTCCTTTAATCTAGC
GATGATAAGCATGGTAGCGAATATGGATAGTAGCAACAATAAGTAACACTCTAAGTGGCCTTGTCGGCCTTGGCAGCGGTAGCGGCGGCCTGGCCTCTGA
GACGACCAGTCCTCCTTGCAGCGATGAGACCAACCTTCTGGCCAGGAGGTGCATCACGGCGGACGGTGGAGGCGTGACCAATGTGCTGGTGGTTACCTCC
TCCGTGGGGATGCTCAACGGGGTTCATGGCCACACCACGCACCTTAGGCCAGCAGTTCCTCTTCACGCGGTACTTGTGGTAGGCGTTTCCAGCCTTGAGC
ATCGGCTTCTCAGTCCTGCCACCACCAGCAACCTGACCGATCATGGCACGGCAGCTGCTGGGGACAATCTTCTTGGCACCAGAGGGGAGCTTGATCCTGC
AAGAAAATAATATCAACTAGTTGCATGAGCAATACAGTTTATTTGCACTGAACATTACAAAAAAATTGCAGGAATAAAAATACTTCACAAGGCCAAGGAC
ATCTCTCCAACAGAAGCAAGCATGCGGATCAAACAAGGCGCATATGTAAAGGATTATCTTCTATGTTAGCATACATACATCACTTGATAGCAAAATCATA
AGCACAAACATAATTCACCACTTGAAAGAGCGAATTGGCCAATCATATTAATCATGCATAGACAAACAATATCTAGTACATATGCCACCACAATCTTGAT
GGTAGAACAAATAGAAAGCATCCATGGGCAACAATATCAAGTAGTACATATACAACTATATTATAACGATAGAAAAAACAGCAGGATTATTGAACAAAAC
TAGTTGTTTGTGGTGCTCTATTACACAGTATCAACAGAAGCAATTGTTCGAAAATACACTAAACTAGCTACATCCAAGGCATTCGAATCATCTCTAAACA
AATGGTACATATATTTACTTTGGGTCTCTACTAAATAACAAATAATTAAAGCAACATTAAATCGCATCATCCATATTTAGATTGAGCCGAGATCATTTCC
AATAGATGAGTTCTTCTAATCACGCGAACAAATCAATTCAGATCCAATAATAGTAGTTACTACCACACAACTACGACACTAACAAACAGATCTAACACAA
AACATCTCATCAATTCAGGCAAAAAAAAAAGAAGCGAGAGAGATGGGGATCACCTGGATGTGCCGTTGTCGGGGTTGTGGCTGATGACGATGGCGTAGTC
GCCGGACGCCCTGGCGAAGACGCCGCGGTCGCCGACGTGGTGCTCGACGTTGCAGACCACGGCGCCCTCGGGTACCGACCGGATCGGGAGCACGTTGCCG
ATGGAGAGCGTGGCGCGGCGGCCGCAGTAGACGAACTGCCCCGTGTACATCCCCTCCGCCGCGACGAACAGCTCCTTCTGGTGCTTGGAGCGGAACCTCG
CGGGGCCCTTGCGGTGGTGGGTGTGGGACTTGAACACGGAGCCCGCACCCTTACGCTGCGCGCGGATCACGCGACCCATCTCCTCGTCGGCGGCGAGACG
GCGGCGGCGGCGGCGGGGAGAATGGGGGAGGCGGGGGTGGCTAGG