Detailed information on CNT30555578


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30696298Oryza glaberrimaOryza sativa32.8224.7495.56428reverse complement

Expression of CNT30555578

Peptides detected in this lncRNA

>peptide 1 (36 aa)
MELVEVFLAMNCFVPKFLPLFSCTLNCVCSSSSLAP*

>peptide 2 (36 aa)
MDCFIVAGCFRLHKYCVSLLSCLSSVDFIVLCYIGI*

>peptide 3 (56 aa)
MNMPWTVLLWPAVFVCTSIVSHCFPVFPLLILLFYVILESSKLTQYTDFFIIESCI*

>peptide 4 (70 aa)
MLRSCITSSYFYSMLFSYWRIFYFLVQQFIGIFLSIVLSIYTSFLACLLFYLINELASCGLFSHVACCTR*

>peptide 5 (74 aa)
TLVSSSISVPRLDLGPGPDLIGIFGSDLRPAVCPPPDSSVEFGWGARARFARFFCVTVRSVSGAGLLDLSGVLV*

>peptide 6 (87 aa)
PSLLLHLRPAAGSGARSRSDRDLRLRSPSRGLPASRFVGGVWVGGARALCSVFLCDCAIGFGSGVARSERSTRVRARVVGDSSAWEA*

Sequence

>CNT30555578
ACCCTAGTCTCCTCCTCCATCTCCGTCCCGCGGCTGGATCTGGGGCCCGGTCCCGATCTGATCGGGATCTTCGGCTCCGATCTCCGTCCCGCGGTTTGCC
CGCCTCCCGATTCGTCGGTGGAGTTTGGGTGGGGGGCGCGCGCGCGCTTTGCTCGGTTTTTTTGTGTGACTGTGCGATCGGTTTCGGGAGCGGGGTTGCT
AGATCTGAGCGGAGTACTCGTGTGAGAGCTCGTGTAGTTGGCGATTCCTCCGCGTGGGAAGCTTAGATTCGTTGTGTGGTCTAGTCGCGTCTCGCAGATT
CGATCGAACGCTACGATGAATTCGTGTTTCTGGTGTTCCTTTTACGGATGGAATTGGTCGAAGTGTTTCTGGCTATGAACTGCTTCGTGCCAAAATTCCT
GCCTCTATTTAGCTGTACTTTGAACTGTGTGTGTAGCTCTAGCAGTCTAGCCCCCTAGAACTCGTTCATTCATTCATGCTGTTACCTTTTCAGTAAGAGC
TAAAGCTAATTCCTAAATTTGTCCGGGGACCAAGCTAGTCCTGTTTTATGCAGCAGCTCCTATTTTCATAGCTTCCAGCTGATTCCTGCTAGTATAATAC
TATAATTTATAATATGAATATGCCATGGACTGTTTTATTGTGGCCGGCTGTTTTCGTCTGCACAAGTATTGTGTCTCACTGCTTTCCTGTCTTTCCTCTG
TTGATTTTATTGTTCTATGTTATATTGGAATCTAGTAAGCTAACACAGTACACCGACTTTTTTATAATAGAATCTTGTATATAGGATGAGGTCATATCGA
TGAATGATTAACCCCTTAGTGTTTTTATGCTGGTATTTGTGATACATCATACATGGTCTTGTAAAGCTCATTAGCTTTTGTGCCAATCGAATGCTTCGAA
GTTGTATCACATCGTCTTATTTCTACAGTATGTTGTTTAGTTATTGGCGTATTTTTTATTTTCTGGTCCAGCAATTTATTGGCATATTCTTATCTATTGT
ACTGTCTATATATACTTCATTTCTTGCATGTTTATTGTTTTATCTTATTAATGAACTAGCATCTTGTGGTTTATTTTCTCATGTTGCCTGCTGTACCAGA
TGATTTTTTTCTCCTTATGAATTGGCATGCTTAAAGTATATCTACTAAGTGTAATTCTGGATATATGCGTATCTTGTTAACTTTGCATTATAGAGGAACA
TAGTGCAGCTTGTGTGGCTTTGCAGTTGGTATTCTAGATGATTTTACTATGTGTTGGTCTTGTTTATTTTGCATCTCTGCGAAGCTATACATGTTAGATA
TGTG