Detailed information on CNT30555577


BLAST search results

BLAST vs Swiss-Prot:
sp|B3A0N2|NLTP_LYCBA, E-value = 7e-11

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30664182Oryza glaberrimaTriticum dicoccoides37.1837.3289.32103forward
CNT30682526Oryza glaberrimaTriticum urartu23.8312.6986.3666forward
CNT30721578Oryza glaberrimaTriticum spelta36.4633.3390.1101forward
CNT30347328Oryza glaberrimaEragrostis tef20.2219.3189.2956reverse complement
CNT30582166Oryza glaberrimaEchinochloa crusgalli23.110.2190.6264forward
CNT30498573Oryza glaberrimaDigitaria exilis24.5514.2685.2968forward

Expression of CNT30555577

Peptides detected in this lncRNA

>peptide 1 (82 aa)
PGAVGGRADSVGDVDAALGGDAGDEVGPQAAHGAGLLLEAGAALAAGAATSSATTITAATYLLFAARAIDRSHEDQVKLLLN*

>peptide 2 (71 aa)
MLTPHLEGMPATRSGLRPPMALVCCLRQAQRSPPAPPPAAPPPSPPPHTYYSPREPSIGHTKIKLSCCLIS*

Sequence

>CNT30555577
CCTGGAGCAGTCGGTGGAAGGGCTGATAGCGTAGGGGATGTTGACGCCGCACTTGGAGGGGATGCCGGCGACGAGGTCGGGCCTCAGGCCGCCCATGGCG
CTGGTCTGCTGCTTGAGGCAGGCGCAGCGCTCGCCGCCGGCGCCGCCACCAGCAGCGCCACCACCATCACCGCCGCCACATACTTATTATTCGCCGCGCG
AGCCATCGATCGGTCACACGAAGATCAAGTTAAGTTGCTGCTTAATTAGCTAAGCGCAGTACTATGCTGGAGTGGAG