Detailed information on CNT30555575


BLAST search results

BLAST vs Swiss-Prot:
sp|P07398|RBS3_WHEAT, E-value = 6e-30

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30597219Oryza glaberrimaOryza meridionalis27.7144.3399.35465forward
CNT30578464Oryza glaberrimaOryza barthii91.5498.2198.371536forward

Expression of CNT30555575

Peptides detected in this lncRNA

>peptide 1 (90 aa)
MTVVEHANDRKCPATAIRSKSRASMPNPEINSDDQDLAETWLGPTGPSFGLGLLLSLPYPFRRFLGLHFGVKMELKSPTLVWMKISFNLV*

>peptide 2 (30 aa)
MSKILSLYSSSLDFMCYSLFLLPKINNYFS*

>peptide 3 (69 aa)
MRMIGNAPQLPSGVNQERPCQTLRSTAMIRIWPKPGLAQLAQVLAWASFSVCLIHFAGFWACILVLKWS*

>peptide 4 (68 aa)
MKLINCTCLTLSKPMMRTKASGYAFFASSSSLSTWVASVHPNMGSFHMVLHCQWRQVRQSLELLNALNR

>peptide 5 (47 aa)
MHNWSVNSVWFCGQAAQPRAQHVLAWRYSLINRIFASLLLSQPNFSN*

>peptide 6 (36 aa)
MAIYAGNFWHLGRISLLTRTFRKSDLDALGKYHVPG*

>peptide 7 (33 aa)
MLELKPTTMLNVLLFLYYAGIDGIKSAFNSRQQ*

>peptide 8 (32 aa)
MDENFLQLSLDFLLIRWFITCIQIYTNTYGIC*

Sequence

>CNT30555575
AATAGTTCTCACTAAACAAATCTTAATTACTCGAAATGATATTTCTATTAAAGCAAATAACAAAGTATAAGAAATAGAAAAGGATCACCGATAACTCCGG
AATTCCTCCGATTTCTTCTACGACCTTAATCTTTCCCTAATTCTAGTATACAATAAAATACAATAGAGCCTCTTATAATTCAGCTCAAGATTGGAGTGTG
TGATGTGAAGTGAGGATGAGAGCTCCTTAAATAGGTAGGTATGACGGTTGTAGAGCATGCGAATGATCGGAAATGCCCCGCAACTGCCATCAGGAGTAAA
TCAAGAGCGTCCATGCCAAACCCTGAGATCAACAGCGATGATCAGGATTTGGCCGAAACCTGGCTTGGCCCAACTGGCCCAAGTTTTGGCCTGGGCCTCC
TTCTCAGTCTGCCTTATCCATTTCGCAGGTTTTTGGGCTTGCATTTTGGTGTTAAAATGGAGTTAAAAAGCCCAACACTTGTATGGATGAAAATTTCCTT
CAACTTAGTCTAGATTTCCTCCTAATTCGGTGGTTTATTACCTGCATCCAAATATACACCAACACTTATGGAATATGTTAGAATTAAAGCCTACCACTAT
GTTGAATGTTTTATTATTTCTGTATTATGCAGGTATTGACGGCATAAAATCGGCATTTAACAGCCGCCAACAATAATCATAACTCGATCGTCAGATTGAT
ACAACATCTGACAAATATAATCCCCAAAACAGGAGTATAGTATTACTTCTCATCGAGAAGGCCTGAACATGTCTAAAATTTTGTCCCTTTACTCATCCAG
TTTAGATTTTATGTGCTACTCGCTTTTCTTATTGCCAAAAATCAACAACTATTTTAGCTAAGTCCGTATGCACAATTGGTCCGTCAATTCCGTATGGTTC
TGCGGTCAAGCGGCACAGCCGCGCGCACAGCACGTCCTGGCCTGGCGGTACAGCTTGATCAACCGAATCTTTGCTAGCCTCCTTCTCTCACAACCGAATT
TCTCTAACTAAATCAACCTTCATATATACGAATCAAAAGTTGATATGGCTATATATGCTGGTAATTTCTGGCATTTGGGCCGTATCAGTTTGTTGACGCG
CACATTTCGTAAAAGTGATTTAGATGCTCTAGGCAAATATCACGTGCCAGGATGATAAACAAATACCAGAATTTTGCAAAACCAAAATTTCATTGTCGAC
GGATTCAGATATGCTCTAGGCATCATATTACATGAGTACGTGTGTATAGCCGGAGATCTTGCATTCACGTGCCCTGTCTCACCGTCACCGAACGATAGAC
CGATAGTTGTAGTAGTACTCTTGCAACAACGGCAGGTCGGAGCGCGAGAGAACAATTACGTGCAGCTTAACACGGACACACAAAAAAAAAGAAAAAGAAA
GAACATGCACGAAGGAACGAAAGCGCTTAGTTGCCGCCTGACTCCTCGCAACCCGGTGGCTTATACGCGATGAAGCTGATTAACTGCACCTGCCTAACGT
TGTCAAAGCCAATGATGCGAACGAAGGCATCAGGGTATGCCTTCTTTGCCTCCTCGAGCTCCTTGAGCACTTGGGTGGCATCGGTGCATCCAAACATGGG
CAGTTTCCACATGGTCCTCCACTGTCAATGGCGGCAAGTACGACAGAGTCTCGAACTTCTTAATGCCCTCAATCGGCC