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Detailed information on CNT30555554


BLAST search results

BLAST vs Swiss-Prot:
sp|Q0IQF7|RS16_ORYSJ, E-value = 1e-95

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30696918Oryza glaberrimaOryza sativa49.5781.1698.02405forward
CNT30515426Oryza glaberrimaJuglans regia25.0915.685.85205forward
CNT30562499Oryza glaberrimaActinidia chinensis10.0436.9491.4682forward
CNT3083687Oryza glaberrimaVigna radiata22.1519.0385.08181forward
CNT30438780Oryza glaberrimaAegilops tauschii51.4152.386.9420forward
CNT30247768Oryza glaberrimaAvena sativa42.9657.7386.61351forward
CNT30663140Oryza glaberrimaTriticum dicoccoides42.8450.7288350forward
CNT30472632Oryza glaberrimaSaccharum spontaneum52.028.6991.76425forward
CNT30136796Oryza glaberrimaLolium perenne24.9729.8788.24204forward
CNT30581659Oryza glaberrimaEchinochloa crusgalli23.0129.1989.89188forward
CNT30117820Oryza glaberrimaOryza nivara85.5689.6298699forward
CNT30176592Oryza glaberrimaVigna angularis22.1522.2187.29181forward

Expression of CNT30555554

Peptides detected in this lncRNA

>peptide 1 (46 aa)
MRMSMSLKRDLPASRMGSNALRRSISGLISSIGTPFTLISPRPGLQ*

>peptide 2 (36 aa)
MQNHIPETTIVLNASVASISQCQKGSGLRLKRLNLK*

Sequence

>CNT30555554
AAACAAAGAGCAATTACCATAACCATTTGCACATAACAGACAGAATAAGAACACCTAGAATAAAACTCATAACATAGCATAAACATAAATTAAGGCAATA
GTGTCACAGCTTCCCTTGACATAGGTAACATGCAAAACCATATTCCAGAGACTACAATAGTCTTAAACGCCTCAGTCGCATCCATTTCACAATGTCAAAA
AGGTTCGGGACTACGCTTAAAAAGACTAAACTTGAAGTAAAGCAGTAGCTAGATGTAGAACCAGCAAAATAGCTCCATTGATAGGGTGGAAAAGAGAACA
CCGCTCCGAATCGATCCGGCGAGCGCTCAACGGTACGATTTCTGGAATCTGGCGCGGGCACCACGACCACCGAACTTCTTGGGCTCGCAGCGCCTGGGGT
CGGCGACGAGTAGAGTGCGGTCATAGCGGGCAAAGATGTCCTTGACCTCCTTCTTGGACGCCTCGTCGACGTACTTCTGGTAGTAGGCGACGAGGGCCTT
GGCGATGGCCTGGCGTATCGCGTAGATCTGCGACGTCTTCCCTCCGCCGCGGACGCGGATGCGCATGTCGATGTCCTTGAAGCGGGACCTCCCCGCGAGC
AGGATGGGCTCGAACGCCTTGAGGCGGAGCATCTCCGGCCTGATCAGCTCGATCGGGACGCCGTTCACCTTGATCAGCCCGCGCCCCGGCTTGCAGTAGG
AGACGGCCACCGCCGTCTTCTTGCGCCCGAAGCACTGGACCGTGCCTGGCGGCGGGCGGGTGAGCGCGGCTGCCATGGTTGCGGCGGTGGTGGCGCGCGG
CTTGGTGCGGGAGAGAG