Detailed information on CNT30555553


BLAST search results

BLAST vs Swiss-Prot:
sp|P01053|ICI2_HORVU, E-value = 7e-18

BLAST vs NONCODE:
NONORUT002477, E-value = 2e-80

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30697884Oryza glaberrimaOryza sativa58.7774.1190.99355forward
CNT30286679Oryza glaberrimaTriticum aestivum26.9914.3180.37163forward
CNT30384527Oryza glaberrimaTriticum turgidum15.8936.583.3396forward
CNT30471212Oryza glaberrimaSaccharum spontaneum26.8223.3484.57162forward
CNT30104461Oryza glaberrimaOryza rufipogon72.3575.7486.27437forward
CNT30578397Oryza glaberrimaOryza barthii54.8100.397.28331forward

Expression of CNT30555553

Peptides detected in this lncRNA

>peptide 1 (44 aa)
MREASRWWGCWRRCRRRCGRGWGGSRWSPATPLEARRCRRLACP*

>peptide 2 (78 aa)
MVGVLATVPTKMRTRLGRKSLVTGDPTGSTTMSASGMSLRITFFASSTGSPTTSGHDVFRSSSPPELAADLTTPAMID*

Sequence

>CNT30555553
AAGAACTGAAACATTTTTTCACTAAATGCTGCAACATTAGTTTATGAGAGGCGAAACACAGCCCGATTTTTTTAAGAGAAAAATAATAAAATGGGATGTG
CGATTTGTAGTTGTTTTTAGCTAGGTAGTTGGCTACCATGCATTAAATGAAGGTCTCTTTATTTATTCGTAGGAAAAAAAGATTAGCACGTAGTACGTAC
ATAGGGTAAAACATTATTCAGATGGGGATGGATCGATTGAAACATACACAGTACATATCACTTGCGTGCATGTGATCATTATTTAATTAAGATAAAGATG
GCCGGGGCCCGGTCGCTGAAGGAAGGCAGATGAGGGAGGCTAGCCGATGGTGGGGGTGCTGGCGACGGTGCCGACGAAGATGCGGACGCGGTTGGGGCGG
AAGTCGCTGGTCACCGGCGACCCCACTGGAAGCACGACGATGTCGGCGTCTGGCATGTCCTTGAGGATCACCTTCTTTGCCTCCTCCACCGGCAGCCCCA
CCACCTCCGGCCACGACGTCTTCCGCTCCTCCTCGCCACCGGAGCTCGCCGCCGACCTCACAACTCCGGCCATGATCGATTGATGATGGTGAGCTATATA
TATC