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Detailed information on CNT30555551

BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30223394	Oryza glaberrima	Hordeum vulgare	32.63	29.49	97.65	340	reverse complement
CNT30363889	Oryza glaberrima	Sorghum bicolor	16.22	36.5	96.45	169	forward
CNT30106724	Oryza glaberrima	Oryza longistaminata	32.63	38.25	99.41	340	reverse complement

Expression of CNT30555551

Peptides detected in this lncRNA

>peptide 1 (49 aa)
MKKARTEMRKEGVRQDDFGSHVKVLRKVSAGARSRSRHVRPLGRVFAHF*

>peptide 2 (46 aa)
RRLGILRRKSGLSGLVVVCHHLPPILHIRSRLSLRSYSQGARGLTV*

>peptide 3 (32 aa)
MFARWAECSPTSESSPLERNPCPPQQENGCAF*

Sequence

>CNT30555551
GCGGCGGTTAGGCATCCTTAGACGAAAGAGTGGTCTTTCAGGATTGGTCGTTGTGTGTCACCACCTCCCACCTATCCTACACATTCGATCAAGGTTGTCA
CTGCGAAGCTATAGTCAAGGTGCACGGGGTCTTACCGTCTAGCCGTTGGTACTCCGCATCTTCACGGAGAATTCAATTTCACCGGGTCCATGTCGGAGAC
AGCGGGGCAGTCGTTACACCATTCGTGCAGCTCACCGGGAGGATCGCCCTCCCAATTCGAAGTTTTTTCCTAGAAGTTTCAACCGTCGTTGACTATGACA
ACAGTCGCGACCGACTATTAAGATCCTCGCGACTATGGCAGGGCGGTACGCTCTGCTCTCTCGCGACCTCTTCTCTAATCAAAAGACTAAAGGCCCCTAT
GGAAGATGAAAAAGGCGAGGACTGAAATGAGAAAGGAAGGAGTTCGGCAAGACGACTTCGGTTCACACGTGAAAGTGCTTCGAAAGGTGTCAGCAGGTGC
GCGGAGCCGGAGCCGGCATGTTCGCCCGCTGGGCCGAGTGTTCGCCCACTTCTGAGTCTTCGCCTTTAGAGAGAAATCCGTGTCCGCCCCAGCAAGAAAA
CGGCTGCGCGTTTTAGCCCAGAGTTTGCTGGTCGCCAAAGACGAGAGCTTCGCCTTTGGAAGCGCCAGTAGCGTAGGGCGACCGGGCCAGCTGAGCCCCT
CTGAATTAGTTGACGGCTTTGATGACTCGACGGTGAATATTAAGGAAAGGAGAGCGAGGGGAAGAGGGGGCAGCCCTCGGCCCGATCATCCAATTCGCTC
CGACGATCCAGGCATGGTTCAGTAGTCAAAGCAACTTCGTCACTTTCGTGTACCCATCGGACGGCAGCCCTTTCGGGGGTTCCTTAGGGACCGATTCACT
CTGCGTAGATTGACTGAACGCAGAAAGCCTTCCACTAGCAGGCGATCGTCATTCTCACTTCTGATATCTCCAGGTCTTGTCACCAAAAACCTTTCCCGAT
TGACAGAACGTCCCGCTACTGACACTTGAAAAAGCAGCATTC