Detailed information on CNT30555549


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30697566Oryza glaberrimaOryza sativa83.385.0794.331481forward
CNT30184081Oryza glaberrimaSecale cereale13.1629.3682.05234forward
CNT30223895Oryza glaberrimaHordeum vulgare13.2228.881.7235forward
CNT30470705Oryza glaberrimaSaccharum spontaneum13.2234.6682.55235forward
CNT30104337Oryza glaberrimaOryza rufipogon73.9684.6794.521315forward
CNT30117980Oryza glaberrimaOryza nivara45.8477.8493.62815forward
CNT30604723Oryza glaberrimaOryza punctata30.2631.8281.41538forward

Expression of CNT30555549

Peptides detected in this lncRNA

>peptide 1 (57 aa)
MMAARVHPNNKQITMFCVFSAIVLLMIFFIRSSIHLVVLVLVNVCWVVSGFVDPVWQ*

>peptide 2 (58 aa)
MTTARGRSACDDGRAGSPKQQTDHNVLRFFCHCFIDDFFYSEFYSFSCSRISQCVLGC*

>peptide 3 (46 aa)
MSCILRCHVFDDAVGLYQSIISLKEDDIQNSILWTKRSLDGLRTVP*

>peptide 4 (53 aa)
MQSTTTVPAIRLLDAQPLCDHSNGVMTFHCYIWNILDNKSCFECKNCHFDVIF*

>peptide 5 (37 aa)
MGGGGGELGFRPSRTLLDLIRACRPAAPRRPESPLRH*

>peptide 6 (38 aa)
MCIDMLPLYLLSLLCEFGQIEFLLIYHSNLVFILVFVV*

Sequence

>CNT30555549
CGCGAGCCCAACTCGTGGGTGAGTTTTTTGGCTTGTAAAAGGCCATGGGGGGAGGAGGCGGCGAGCTAGGGTTTCGACCCTCACGAACACTACTTGATCT
TATCCGAGCTTGCCGTCCGGCGGCGCCGCGGCGGCCGGAGTCGCCTCTCCGGCATTAGCGCCGCCACCGCCGACCTCCAAGGGTTGGCGGGAAGGTGGCG
CGCTTTGTTGGGGGAAAGAGGCGGGTTCGGTTCCCGTGGCAGTCGCCGGCGGTGATCGATGACGACTGCCCGCGGTCGGAGCGCGTGCGATGATGGCCGC
GCGGGTTCACCCAAACAACAAACAGATCACAATGTTTTGCGTTTTTTCTGCCATTGTTTTATTGATGATTTTTTTTATTCGGAGTTCTATTCATTTAGTT
GTTCTCGTATTAGTCAATGTGTGTTGGGTTGTTAGTGGTTTCGTAGATCCTGTTTGGCAATAGTGGATGTAAAAGCGCTTTTTGTTTGTGTAGAATGTGT
TAGGGTAGTATACAAATGTTTTGTAATTGAACATGTGCATAGATATGTTACCATTGTACTTGTTGAGCTTACTTTGTGAGTTTGGGCAAATCGAATTTTT
GCTTATTTATCATTCAAACCTTGTTTTCATTCTAGTTTTTGTAGTTTAGTTTTTAAATATGTCCATATTACAGTATCACTCCACTACAGTTCAATGTCAT
GTATATTACGATGCCATGTTTTCGATGACGCCGTAGGTTTGTATCAATCAATTATTAGCTTAAAAGAGGATGATATACAGAATTCAATTCTGTGGACCAA
ACGGAGCCTTGATGGTTTGAGGACAGTCCCTTGAATGATAAATCAAATATTTTCTTGTGTCCTTGAGAAATTTGGAAGACACGCTGTTAAAATCCATGTC
CTTCTTGCTATCCATGGCTGATGTGGACTCTAATTTCTCCTCGGTTTTGAACTTTTGATGCGGACTCTAATTTCAAGATCCTTTTGAAAATCGTGGTTTT
TCTTCCACAATGTGGTTTTGACTAAATATACGTTCAAAGTTAAAAGATGCCCTCATAACTTGACTTCTGCATTTTTGTATCAACCTGAATCAGTTCAGCA
TCTTTTCTTGGTTTGCAACCTTGCAAAAGTTTGTAGGGTTTTAGAAGCCATGCAGAGCACTACAACAGTGCCTGCAATCCGTCTGTTGGATGCACAGCCT
TTATGTGATCATTCTAATGGAGTAATGACCTTCCATTGTTATATTTGGAACATACTAGATAATAAGTCTTGTTTTGAGTGCAAAAACTGTCACTTTGATG
TGATCTTTTGAATTTGTACGAATTTTAATAGTGGGCAGGTTTAAGCAAGGATGAAGCTGCTGCTGTGTAAGCAAAGCAGGTAACTTCTGAATATGACTGA
ACGTTGGTGTGAGGTAGCAACAACTGGAAGCTGGCGAATATGTTGAAGAAAATGATGCAATCATGAAGATCACATTTAATCTTTTCTACCACTAGTTGCT
GTCGATGGCTTCTTCATTCTTTGTTCCTGATCTATCGGCTATCGCTGTTTATCTGTTTGTCACAGACTCGATACTTCCCTTTTAGGCTGACTAAGTCTAG
CTTAAGCTTGGCTATTAGAGGTCTGTTAGTCAGGCTTGGTTGTCTGTATGATCACCTGCTTTGCTTTCCCTGTTCCCAAATGTACTCTGAAAATAAGAAC
TATGTTATTTCTCTTCATATCAAATGTATAAATGGTTACCCTGTTAAAAATGATTAATGAACTGCCCTGTGGTTCTTA