CANTATAdb - search

Detailed information on CNT30555545

BLAST search results

BLAST vs Swiss-Prot:
sp|P18566|RBS2_ORYSJ, E-value = 6e-68

BLAST vs NONCODE:
NONORUT002193, E-value = 4e-153

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30672589	Oryza glaberrima	Setaria viridis	30.47	31.54	85.71	252	forward
CNT30180337	Oryza glaberrima	Secale cereale	33.74	19.47	87.1	279	forward
CNT302730	Oryza glaberrima	Zea mays	30.47	39.87	84.92	252	forward
CNT30648517	Oryza glaberrima	Rosa chinensis	26.12	42.35	87.96	216	forward
CNT30604902	Oryza glaberrima	Oryza punctata	15.36	39.08	92.91	127	forward

Expression of CNT30555545

Peptides detected in this lncRNA

>peptide 1 (56 aa)
HTLCINIYSRSFHRFHSHMPHPTTYSRSRYHSYIKSERDQVKQKQKQSTAGKIKRR*

>peptide 2 (54 aa)
MKLMSCTCLTLSKPMIRTNASGYAFLASSSSLSTWVASVHPNMGSFHMVQYLPS*

>peptide 3 (69 aa)
MAAALASRGGRGCGRIGRRARAYPRAFVAGSRARGGVAPGSWVVAVVASRPGLWLWSSSSSLHMMEYAAA

Sequence

>CNT30555545
CTCATACCCTTTGTATAAATATATATAGCCGGAGCTTTCATAGATTTCATTCACATATGCCTCACCCAACAACATATAGTCGTAGCAGATACCACTCTTA
CATCAAGTCAGAGAGAGATCAGGTGAAACAAAAACAAAAGCAGAGCACGGCCGGTAAAATCAAAAGACGATGAACAAACTGGGAACACACGAAACAAGGT
GGGAGACATCATCGAATCAGAGATGAACAATTAAACGAGGCTATATATGACGATGACGGCTTAGTTGCCACCAGACTCCTCGCAGCCCGGGGGCTTGTAG
GCGATGAAGCTGATGAGCTGCACCTGCCTGACGTTGTCGAAGCCGATGATACGGACGAATGCATCAGGGTACGCCTTCTTGGCCTCCTCGAGCTCCTTGA
GCACCTGGGTGGCGTCGGTGCACCCGAACATGGGCAGCTTCCACATGGTCCAGTACCTGCCGTCGTAGTATCCGGGGGACCTGTGGTTCTCACGGTAGAC
GAATCCGACCTTGCTGAACTCGAGGCAGGGCACCCACTTGGAACGGAGCAGGCTCCCGCGGTACGTATAAATAGCCAAAACTCAGCGGTCTCACCCTCCC
TAGCTAGCTAATCGGATGGCAGCGGCGCTCGCGAGCCGCGGAGGCCGGGGATGTGGTAGGATTGGCCGGCGTGCGCGCGCCTATCCGCGGGCGTTTGTGG
CTGGCTCACGCGCGCGCGGTGGTGTCGCGCCGGGCTCGTGGGTTGTGGCCGTGGTGGCATCTCGACCCGGGCTCTGGCTGTGGTCCTCGTCTTCCTCTCT
CCACATGATGGAGTATGCGGCGGCGAG