« Back to Oryza glaberrima search


Detailed information on CNT30555464


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30578077Oryza glaberrimaOryza barthii40.9745.99100390forward
CNT30116251Oryza glaberrimaOryza nivara20.913.0988.44199reverse complement

Expression of CNT30555464

Peptides detected in this lncRNA

>peptide 1 (66 aa)
ESSLVDEEKKHGSEGGRRKMEMSGGWLFCWLQVMLCGSFFVSKERERRVVVGWFYTRERERRGGPH*

>peptide 2 (32 aa)
MEIGEELRAPAMIIYRLFTRDPCQHILLLRID*

Sequence

>CNT30555464
GGGAAAGCTCTCTTGTTGATGAAGAGAAGAAGCACGGGAGCGAGGGAGGGAGGAGGAAGATGGAGATGAGCGGGGGCTGGTTGTTTTGCTGGTTGCAGGT
GATGCTTTGTGGGAGCTTTTTCGTGAGCAAGGAGAGAGAGAGGAGGGTGGTGGTTGGTTGGTTTTATACGAGGGAGAGGGAGAGGAGGGGAGGGCCCCAT
TGACCCGGATCCCTCTGGGCCATTTGACCGAGTTGGTGCGATGAGACGAGAGGAGGAGCGGAGGTTGGTTGAGTGGCTGCCATTTGCAAAGGCCCTCCCC
CCACGGGGCTGGATTTGGTAGGAGGGGACACGAGCTAGCCCAAGGTTTTCAATTGGTCCAAGGGATTGCTGTTGCTTGATGGAAGAAAAAGTCTGAGTTG
GAAACAAACTTCAATGGCTCAACACCCACTTCCACGTTAGTAGATTTTTTGGGGCACACATCAGCAGCACATGGCGATGCTTAATGGGCTCACCCACCGA
CATTTTTCTAGCACCCCACGCTAGCTCCCCCTCCTTTCTGAGATTCTAGAAAACCCAGCAGCATGTCTTTGTGTGTGATTGTGCAAGAAAGAAAGCAAAG
AAAGGGAAAGGGTGAAGCAAGAAAGGGGAGAATCTGATCAATTTGATAAGAAATGCTCCAAAACATGATGCAGATCTACTGATGAGAAGAAGAGGAGGCA
AGGCAAATTGATGGAGATTGGAGAGGAGTTGAGGGCACCCGCAATGATTATCTATAGGCTCTTTACAAGAGATCCATGTCAGCATATTTTACTACTTAGA
ATAGATTAAATGAAGAGAGAGAGAGAGCAAAGCTATCTACTAACCTAGAGATAGTCTATAGAGAAAAACGAGGCAATGGATTAGAGAGCTATAGATACCC
ATGCAAACATACTATTGAGTTGGTTTACTATTAATCTAGTCTATTGCTGAGA