Detailed information on CNT30555431


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30697180Oryza glaberrimaOryza sativa22.789.7198.8990forward
CNT30107365Oryza glaberrimaOryza longistaminata62.0354.8198.78245forward
CNT30578260Oryza glaberrimaOryza barthii10087.58100395forward

Expression of CNT30555431

Peptides detected in this lncRNA

>peptide 1 (45 aa)
GRVRGGRAEDGAGASVTVGRGPAASSVRSVFSYVSSNLNAARTSK*

>peptide 2 (36 aa)
WESEGRTRGGRCRRFGYGRPRTCGEFGSIRLQLCIK*

>peptide 3 (30 aa)
MQQEQANDDRIPKNTSCHLCKVQERHVLCI*

Sequence

>CNT30555431
CTGGGAGAGTGAGGGGCGGACGCGCGGAGGACGGTGCAGGCGCTTCGGTTACGGTCGGCCGAGGACCTGCGGCGAGTTCGGTTCGATCCGTCTTCAGCTA
TGTATCAAGTAATTTGAATGCAGCAAGAACAAGCAAATGATGACAGAATCCCGAAGAACACATCCTGTCACCTCTGCAAAGTTCAAGAGAGGCATGTACT
CTGTATATAGGTGTTGACATTTCATTTCTGATTGAGGAGCCCTTTGAAACAGAGAGTTTGAAAGGATTGATTCCTACCAATTCTTTTGAAATTTCTATAA
AACTAGCCTATGATGTTGCGTATTCACGCGACTCTAGGCCTCCTATTATGTGGTATGTGGGAGTGGCTCTCGGTTTTTATGGGTTTCTCGTTGCT