Detailed information on CNT30555417


BLAST search results

BLAST vs Swiss-Prot:
sp|Q53M52|TBA2_ORYSJ, E-value = 9e-113

BLAST vs NONCODE:
NONGMAT000219, E-value = 6e-47

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30697150Oryza glaberrimaOryza sativa45.85101.3794.32370forward
CNT3071007Oryza glaberrimaQuercus suber46.8473.9781.75378forward
CNT30379228Oryza glaberrimaManihot esculenta56.2652.0682.16454forward
CNT30371316Oryza glaberrimaOryza glumipatula92.4463.2297.05746forward
CNT30570163Oryza glaberrimaVitis vinifera55.6454.2380.62449forward
CNT30104015Oryza glaberrimaOryza rufipogon95.1763.5897.14768forward
CNT30578286Oryza glaberrimaOryza barthii78.0765.6299.84630forward
CNT30117869Oryza glaberrimaOryza nivara73.85100.3498.15596forward
CNT30724701Oryza glaberrimaLupinus angustifolius55.6439.7781.51449forward

Expression of CNT30555417

Peptides detected in this lncRNA

>peptide 1 (36 aa)
MSMRENTSTTLVELEIMHTALCTLARSPPGTTLGGW*

>peptide 2 (49 aa)
ASIASKDSNALSSCFVLRQTTNLNIKDVTKKVHINNTRSQQLELQANPA*

>peptide 3 (73 aa)
MPHLNPVGHQSTNWMVRFVLMVATAAFTSLGTTSPRYIRQHAMYLPWRGSHLAIMEDGSKALLVISATESCSW*

Sequence

>CNT30555417
TAGCATCAATAGCATCAAAAGATTCTAATGCTTTAAGTAGTTGCTTCGTTTTAAGACAAACCACGAACTTGAATATTAAAGATGTCACAAAGAAGGTTCA
CATAAACAACACAAGGTCACAGCAGCTAGAGCTGCAAGCAAACCCGGCATAATCGAAAAGCAAATGTTCTTTCAAAAGCAGACACACAAACTGATAGATA
GAAGCCCACACGGGCAGATCATAGGATAGCAGCAGTAATCAGGCACATTGCCAAGGCAGCAGGAACCCCTGAACCCTCTCTAGTACTCGTCACCCTCATC
ACCCTCGTCACCATCGTCGAACTTGATGTCGATGCGGGAGAACACCTCGACGACGCTGGTGGAGTTGGAGATCATGCACACGGCCCTCTGCACCTTGGCC
AGGTCTCCCCCCGGGACGACGCTGGGCGGCTGGTAGTTGATGCCGCACTTGAACCCCGTGGGGCACCAGTCCACGAACTGGATGGTGCGCTTCGTCTTGA
TGGTGGCCACCGCGGCGTTCACGTCCTTGGGGACCACGTCGCCGCGGTACATCAGGCAGCACGCCATGTACTTGCCGTGGCGCGGGTCGCACTTGGCCAT
CATGGAGGACGGCTCGAAGGCGCTGTTGGTGATCTCCGCCACGGAGAGCTGCTCGTGGTAGGCCTTCTCGGCCGAGATCACCGGGGCGTAGGAGGAAAGC
ATGAAGTGGATCCTCGGGTAGGGCACCAGGTTGGTCTGGAACTCGTTGACATCCACATTCAGAGCACCGTCGAACCTCAGGGAGGCAGTCAGTGAGGAGA
TGACCTG