Detailed information on CNT30555411


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30673993Oryza glaberrimaSetaria viridis64.7646.6997.7261reverse complement
CNT30513357Oryza glaberrimaJuglans regia38.9623.6894.9157forward
CNT30525798Oryza glaberrimaPhaseolus vulgaris41.1921.595.78166forward
CNT30177674Oryza glaberrimaSecale cereale64.7612.8698.08261forward
CNT30221081Oryza glaberrimaHordeum vulgare64.7612.8998.85261reverse complement
CNT30394116Oryza glaberrimaTriticum turgidum64.7663.0498.08261reverse complement
CNT30538116Oryza glaberrimaBrassica napus39.2113.0496.2158reverse complement
CNT30662247Oryza glaberrimaTriticum dicoccoides45.6653.6497.83184reverse complement
CNT3017925Oryza glaberrimaZea mays64.7622.87100261reverse complement
CNT3067405Oryza glaberrimaLeersia perrieri51.8650.4896.17209reverse complement
CNT30650379Oryza glaberrimaRosa chinensis30.7715.9898.39124reverse complement
CNT30203328Oryza glaberrimaHelianthus annuus64.7631.7195.79261reverse complement
CNT30680054Oryza glaberrimaTriticum urartu64.7614.3199.23261forward
CNT30371139Oryza glaberrimaOryza glumipatula61.0449.798.37246forward
CNT30409295Oryza glaberrimaPapaver somniferum64.7646.1996.17261reverse complement
CNT30102660Oryza glaberrimaOryza rufipogon63.0367.9196.85254reverse complement
CNT30115468Oryza glaberrimaOryza nivara35.244.11100142reverse complement

Expression of CNT30555411

Peptides detected in this lncRNA

>peptide 1 (85 aa)
GPCLSPSVADHPLGPATDHRLGKLLPHQLANQTRAPPWADFSFCSSAYGVLATVSSCCSPPKGRFLRVTHPFATGNTTSRSTCMC*

>peptide 2 (34 aa)
MQREMLLPLQVGSARRNAVNRSSIYHALQLTSASI

Sequence

>CNT30555411
TGGGCCGTGTCTCAGTCCCAGTGTGGCTGATCATCCTCTCGGACCAGCTACTGATCATCGCCTTGGTAAGCTATTGCCTCACCAACTAGCTAATCAGACG
CGAGCCCCTCCTTGGGCGGATTTCTCCTTTTGCTCCTCAGCCTACGGGGTATTAGCAACCGTTTCCAGTTGTTGTTCCCCTCCCAAGGGCAGGTTCTTAC
GCGTTACTCACCCGTTCGCCACTGGAAACACCACTTCCCGTTCGACTTGCATGTGTTAAGCGGCTTCAGGTCAAGATCCTTTTTCCTATCTATTGAAGAT
GCAAAGAGAGATGCTTCTTCCTCTTCAAGTTGGAAGTGCAAGAAGAAATGCGGTAAATAGGAGTTCCATCTACCACGCACTCCAGCTAACTTCAGCATCC
ATA