Detailed information on CNT30555405


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONORUT001506, E-value = 0.0

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30697227Oryza glaberrimaOryza sativa16.4943.83100213forward
CNT30371329Oryza glaberrimaOryza glumipatula28.4144.3297.82367forward
CNT30106601Oryza glaberrimaOryza longistaminata29.4943.3496.59381forward
CNT30104147Oryza glaberrimaOryza rufipogon49.1571.6799.84635forward
CNT30578166Oryza glaberrimaOryza barthii2547.2299.69323forward

Expression of CNT30555405

Peptides detected in this lncRNA

>peptide 1 (29 aa)
MTDWKICTRQRCLPVTGYNYTLACGDPHL*

>peptide 2 (34 aa)
MHPSKVSTCDGLQLHIGLWRSSPLTARKIRTRQI*

>peptide 3 (33 aa)
MMCCQWRLIDSRRRPLNFCLVFLEDTRDVFIVM*

>peptide 4 (38 aa)
MCLCAYDFVSDVASHRLQVSESGVVLLKPHDVLPMEIN*

>peptide 5 (90 aa)
FSLSLIHRRKGVRAPEDSTALGRGGGGGGRRLSGAWRRRWCEGEAARWCGGARRPAVAAVPPSSSPFSYFSIWCVAAVRRARRRADAVAS*

>peptide 6 (52 aa)
FLSLPYPQKKRGPGAGGLDGPRERRRWRWAAAQRRVAAALVRRRSGEVVRRR*

>peptide 7 (77 aa)
SLSPLSTEEKGSGRRRTRRPSGEAAVAVGGGSAARGGGAGAKAKRRGGAAALGGQRWRRYPHPPPPSLISRSGAWRQ*

>peptide 8 (68 aa)
MQCLKPCSFPVVFSFVVCFSVPIVNLVSSSASCHLLKGISLKCLGLIISSSASITNFLWLQLGTIFLR*

Sequence

>CNT30555405
TTTCTCTCTCTCCCTTATCCACAGAAGAAAAGGGGTCCGGGCGCCGGAGGACTCGACGGCCCTCGGGAGAGGCGGCGGTGGCGGTGGGCGGCGGCTCAGC
GGCGCGTGGCGGCGGCGCTGGTGCGAAGGCGAAGCGGCGAGGTGGTGCGGCGGCGCTAGGCGGCCAGCGGTGGCGGCGGTACCCCCATCCTCCTCCCCCT
TCTCTTATTTCTCGATCTGGTGCGTGGCGGCAGTGAGGAGGGCTCGACGGCGTGCGGACGCGGTCGCCTCCTAGAGGTCAGGGTTGACCGGATTCGGTGG
CGGCCTCCGACTCCACACGCGAGCACCGGCCGTCGTCCTCACCGTTTCGAGCACCGATCGCCACCACCGCCGTTGAGGTTGGGGGACACTGGATCCAGCC
TCCTAGAGGTCAGGGGACGCCGGATCCGGTCAACCCCGACCTCTAGGAGGCGACCGTGTCCGCGCCGGACAGCCTTCTCTTCCGTCCCCAAGCGCCCTCC
TCCTCCTCCATCCTCTTGCGGCCACCGCCGTAGCTTCCTCCTCCGGATTAATCCACTCCCAAGTACTGATCAATGTGTTTATGTGCTTACGATTTTGTTT
CAGATGTTGCAAGTCATCGATTACAAGTTTCTGAATCGGGTGTGGTCTTGTTGAAGCCCCATGATGTGTTGCCAATGGAGATTAATTGATTCTAGAAGAA
GACCTTTGAACTTTTGTCTTGTTTTTCTTGAAGATACTAGAGATGTTTTTATTGTGATGTAGCTAGAAAATTAGAATCTTAACATTTTCCCTGAAATGCA
GTGTCTCAAACCTTGTAGTTTCCCAGTAGTTTTTAGTTTTGTAGTTTGTTTTTCGGTTCCTATTGTAAACCTTGTAAGTTCTTCGGCTTCTTGCCATCTT
TTGAAAGGAATTAGTTTGAAATGTTTGGGGTTAATTATTAGTTCTTCGGCTTCTATTACCAATTTTCTATGGTTGCAACTGGGCACCATTTTTTTAAGAT
GACTTTCTATTCCTGTGATGGGTTCATATCTTGAACTCATTGGAGGTGAGTCTCAGGTATGACGGATTGGAAAATATGCACCCGTCAAAGGTGTCTACCT
GTGACGGGTTACAACTACACATTGGCTTGTGGAGATCCTCACCTTTGACGGCCCGGAAAATACGGACCCGTCAGATCTGAGTGTGCCTCTGATGGGCCGG
TCATCCATCAAAGGTGACTGGACTCACCAGTGACCACTGATCACTGACCAAGCCCAAACCTGTTAAAGATAAGTGTTTGGACCCATTCTTAT