Detailed information on CNT30555402


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30697144Oryza glaberrimaOryza sativa60.9560.3497.55490forward
CNT30677182Oryza glaberrimaSetaria viridis5.9721.5210048forward
CNT30223236Oryza glaberrimaHordeum vulgare13.9325.1791.07112forward
CNT30371232Oryza glaberrimaOryza glumipatula61.0746.4598.78491forward
CNT30151052Oryza glaberrimaBrachypodium distachyon10.737.0791.8686forward
CNT30578126Oryza glaberrimaOryza barthii61.0758.31100491forward

Expression of CNT30555402

Peptides detected in this lncRNA

>peptide 1 (51 aa)
MTVSSAAWSGSLASPSGSNGPPGWSLSSRSCTTIAIAGESPVSISEQNQQV*

>peptide 2 (79 aa)
GKPFSNVNDDENHFETIYSGSKYFSATNPNTWSFLSEDQNEQVFKFISQLDDNLHVHLTHSSTLLKLLPSSSRVRLKLT*

>peptide 3 (57 aa)
GNHSAMSTMMKTTSRQFTQVANISQPQIQTLGPSYQKIRMNRFSNSSPNSTIIYTYI*

Sequence

>CNT30555402
GGGAAACCATTCAGCAATGTCAACGATGATGAAAACCACTTCGAGACAATTTACTCAGGTAGCAAATATTTCTCAGCCACAAATCCAAACACTTGGTCCT
TCCTATCAGAAGATCAGAATGAACAGGTTTTCAAATTCATCTCCCAACTCGACGATAATTTACACGTACATTTAACACATTCTTCCACCCTTCTCAAACT
CCTCCCTTCTTCTTCCCGGGTAAGATTAAAATTAACTTGAGGCCAGCCAGCGTCGCCGGCGGCGAGATGTTTACAGGCTGGGCGTCCTCTCGGCGGCGCC
GGAGATGACGGTGAGCAGCGCCGCCTGGTCCGGGTCGCTCGCCAGCCCCAGCGGGTCGAATGGGCCACCTGGGTGGAGCTTGTCCTCCAGATCCTGCACC
ACCATCGCCATCGCCGGCGAATCTCCGGTGAGTATCAGCGAGCAAAATCAACAAGTGTAGACTAACTAAGGTCCCGTGTTTGAGTTCATCGAAGATAAAT
TAAGGGTACTTCAAATGAGAAAGCTATTAGCGTTTGATTAATTGAGTTCTAATTACTTTAAGTTTGAAAGAGGATTTAAAATTTTTATATAAAAAGTTCT
CGTACGAAATACACCATTCAACAAATTGGAAAGCGTGCTACCGGAAACAAAAAAAATGTAAGACTAATTAAGTTTTAATTATTTTAGATTTGGAAAAGGA
TCTATATGATATTTTAAAGCAATTTTCATATACAAAGTTTTCGTACGAGATATAACATTTAACAAATTGGAAAGCGTGCTACCGGAAACCAAAAGGTGTA
AGAC