Detailed information on CNT30555391


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30696552Oryza glaberrimaOryza sativa53.5243.696.75616forward
CNT30370102Oryza glaberrimaOryza glumipatula53.5222.497.24616forward
CNT30107329Oryza glaberrimaOryza longistaminata42.48100.298.36489forward
CNT30577544Oryza glaberrimaOryza barthii11.0340.8488.19127forward
CNT30117626Oryza glaberrimaOryza nivara53.4342.0997.24615forward

Expression of CNT30555391

Peptides detected in this lncRNA

>peptide 1 (59 aa)
MMYAVARRSCSYDGNCEQDRPSNPFFFPDEFVIWICCWNRLKSICNSTFSFPHHICMHC*

>peptide 2 (32 aa)
RRSSLPPPLRCRPPPRRPPPRRHRVHRRSPPI*

>peptide 3 (33 aa)
MTQISMKIGILLFQVGYLNVCRFAICISLDVYG*

>peptide 4 (29 aa)
MLWPEEVAPMMEIVNKTGPRILFFSLMNL*

>peptide 5 (35 aa)
MGVIGKSVIRYESSLLMHFYSTIEVPQRFFGHIYL*

>peptide 6 (38 aa)
MINDSNLNEDRHIAIPGWLSECVQVCNLHIIGCIWLIT*

>peptide 7 (39 aa)
MDHWIASMFLMVLRVWDFELENVFLFLDLSFCHLVGWILR

>peptide 8 (40 aa)
ADPLSLLRSAADLRLDGRLRAATEFIAAPLPSRKDTLFPA*

>peptide 9 (42 aa)
PILSPSSAPLPTSASTAASAPPPSSSPLPSHLEKIHCFLHDQ*

Sequence

>CNT30555391
CGCCGATCCTCTCTCCCTCCTCCGCTCCGCTGCCGACCTCCGCCTCGACGGCCGCCTCCGCGCCGCCACCGAGTTCATCGCCGCTCCCCTCCCATCTAGA
AAAGATACATTGTTTCCTGCATGATCAATGACTCAAATCTCAATGAAGATAGGCATATTGCTATTCCAGGTTGGTTATCTGAATGTGTGCAGGTTTGCAA
TTTGCATATCATTGGATGTATATGGTTGATAACTTGATATGGGAGTAATTGGGAAATCTGTGATAAGGTATGAATCTTCCCTTTTGATGCATTTCTACAG
CACTATTGAAGTACCACAGAGATTTTTTGGCCATATTTATTTATAACCATGCAAGGAATAATAACTCTTCCTGATTAGGGCTAATTTTTTGTACAAAATC
TATGAGTAAATGAATTGTTCTAATTTGAAACAGAGCCCTCTGGTTTAGTAGAGCTTGATCAGTGAGTTAAAAAAATTGTAGAATACGTGAGTACTGAACA
TGTTATAATTTGAAGCACACTCCTCTGATTGAAAACTTTGAGTAGAAGAGTTGTTCTGACCTAAAACGGAGTCCTAACATGATATCAGTGAGAGTTACAA
ATTGTTTGTAATATCTGTGAGTACGAGGATCGTTCTAATTTGGAACTCAACTCCTCTGATGACAACTTTAATCAGGCAGTGTGAATTATGCATTTCTTGT
TCTCATGAACAATATTTGTTTGAAAAGTGAAAGATCAGAGGTATGTTTTGCCACGGTGGATGAACAGAAAGCCCGGTGAGGATGGCAAACATGGAATGAA
GAGGGTATGATGTATGCTGTGGCCAGAAGAAGTTGCTCCTATGATGGAAATTGTGAACAAGACAGGCCCTCGAATCCTTTTTTTTTCCCTGATGAATTTG
TAATTTGGATATGCTGCTGGAATCGGTTGAAATCTATTTGTAACTCCACTTTCTCATTTCCCCATCATATATGTATGCATTGCTGAAAGTGATGTGAAGA
GGGGAATAGATAGCGTGTAGCCTAACAGACTATGGATCATTGGATTGCATCTATGTTTCTGATGGTCTTGCGGGTTTGGGACTTTGAGCTTGAGAATGTA
TTTCTATTTTTGGATTTGTCTTTCTGTCACCTTGTTGGATGGATATTGCGG