« Back to Oryza glaberrima search


Detailed information on CNT30555389


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9LI74|CHUP1_ARATH, E-value = 1e-25

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30673517Oryza glaberrimaSetaria viridis23.1366.2685.71161forward
CNT30138306Oryza glaberrimaLolium perenne44.9750.3284.03313forward
CNT3012274Oryza glaberrimaZea mays54.7452.3481.63381forward
CNT30353380Oryza glaberrimaEragrostis tef61.6474.4879.72429forward
CNT30367618Oryza glaberrimaSorghum bicolor54.7453.6681.1381forward
CNT30597090Oryza glaberrimaOryza meridionalis27.7342.2397.93193forward
CNT30116475Oryza glaberrimaOryza nivara82.9103.5995.32577forward
CNT30551969Oryza glaberrimaOryza brachyantha64.5150.5187.97449forward

Expression of CNT30555389

Peptides detected in this lncRNA

>peptide 1 (31 aa)
SQSLQSCCFSHQRHLMLLIPEKLCPSWLHAS*

>peptide 2 (34 aa)
MISLGSCSLFPKVVMPTPSPAFLSMRASRGPFGFW

>peptide 3 (33 aa)
SISPIMLLLTSKALDVVDPREVVSFLASRFMRL*

Sequence

>CNT30555389
TCTCAATCTCTCCAATCATGTTGCTTCTCACATCAAAGGCACTTGATGTTGTTGATCCCAGAGAAGTTGTGTCCTTCTTGGCTTCACGCTTCATGAGACT
TTGATAAAACTCTACAACCTCTGGAGCACGGTGTACCTTGTCACCACCAGCAAGATTCCTAGGTAGGGAACCAGGGGGTGGTGGCGGTGGTGGCAGGCCA
CCAGGTTTGCCAGGAGGCGGTGGTGGAGGAGGTGGCCTAGGAACTCTTGGAGCTCTCTTCTCAATATTTGCAAGTTTCAGTTGTGTCACTACTAGAGGGT
TGTTCTGGTTATCACTAGGTTGATCGCTGGATTCAACATTAGCTGTAGAAGCCTTCTCCTTTATTTGAGCAAGTTTTGGAGGGAGTGCAGATCTTGGAGA
TGGCACAATACCTGAACTGTTGACACCGCCATATCTTTGTACCCTAGCTTTCTCGGCCTTCTCTTTTATTGCCTTCTCCCGTTCTGTGGCAAGTTTATGC
CTATCTTTGTAAGCGGGATACTTGTCATCAGCAAAACCTTGTACAGTCTTTGACATCAAATGGAATGAAGATGCAACATTTGCCTCATCCATGATATCAC
TGGGATCCTGTTCCCTCTTTCCAAAGGTTGTAATGCCCACACCATCTCCTGCATTTCTGAGCATGAGAGCCTCTAGGGGCCCCTTTGGTTTCTGGC