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Detailed information on CNT30555388


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30697405Oryza glaberrimaOryza sativa77.1885.68100389forward
CNT30677041Oryza glaberrimaSetaria viridis26.7931.8494.07135forward
CNT30524410Oryza glaberrimaSetaria italica26.7917.2694.07135forward
CNT30295213Oryza glaberrimaTriticum aestivum29.9627.3695.36151forward
CNT30439442Oryza glaberrimaAegilops tauschii28.1747.6592.96142forward
CNT30664041Oryza glaberrimaTriticum dicoccoides28.1737.8795.07142forward
CNT30465769Oryza glaberrimaSaccharum spontaneum26.7923.4894.07135forward
CNT30137065Oryza glaberrimaLolium perenne29.9633.0492.72151forward
CNT30353507Oryza glaberrimaEragrostis tef29.9611.8292.72151forward
CNT30365046Oryza glaberrimaSorghum bicolor26.7914.0294.81135forward
CNT30481599Oryza glaberrimaChara braunii20.2422.9787.25102forward
CNT30498372Oryza glaberrimaDigitaria exilis26.7928.4293.33135forward

Expression of CNT30555388

Peptides detected in this lncRNA

>peptide 1 (52 aa)
MSTMMKTTSRQFTQVANISQPQIQTLGPSYQKIRMNRFSNSSPNSTIIYTYI*

Sequence

>CNT30555388
CAAAATTCATGGAAACCATTATTAGAGACAATTTACTCAGGTAGTAGCAAATAGTCAAAATTCAAACAAAAAAAAATCCAGGGAAACCATTCAGCAATGT
CAACGATGATGAAAACCACTTCGAGACAATTTACTCAGGTAGCAAATATTTCTCAGCCACAAATCCAAACACTTGGTCCTTCCTATCAGAAGATCAGAAT
GAACAGGTTTTCAAATTCATCTCCCAACTCGACGATAATTTACACGTACATTTAACACATTCTTCCACCCTTCTCAAACTCCTCCCTTCTTCTTCCCGGG
TAAGATTAAAATTAACTTGAGGCCAGCCAGCGTCGCCGGCGGCGAGATGTTTACAGGTTGTTGCCGAAGGGGTCGCTGAGGTGCTTGGAGAGGTTCTCGA
CGGGGCCCTCGCCGGTGACGTAGGCCTGGATGAAGAACCCCAGCATGGAGAACATGGCCAGCCGCCCGTTCTTGATCTCCTTCACCTTCAGCAGCGCCGC
CTGG