CANTATAdb - search

Detailed information on CNT30555298

BLAST search results

BLAST vs Swiss-Prot:
sp|F7J0M4|RGA4R_ORYSJ, E-value = 1e-59

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30697109	Oryza glaberrima	Oryza sativa	97.71	39.23	99.69	639	forward
CNT30597053	Oryza glaberrima	Oryza meridionalis	97.71	18.16	99.69	639	forward
CNT30371327	Oryza glaberrima	Oryza glumipatula	100	16.62	99.85	654	forward
CNT30104184	Oryza glaberrima	Oryza rufipogon	96.18	24.47	99.68	629	forward

Expression of CNT30555298

Peptides detected in this lncRNA

>peptide 1 (41 aa)
MEWMAVVTSTMLLDPVSTGKASFIVLFQYSLWMSSITMKNL*

>peptide 2 (33 aa)
MATGENTKIEQAGLDNMARKAGIVVNKYMLHSF*

>peptide 3 (61 aa)
IAHGLMQDELKHHAVSLACLHLSVTARSNRLNDAPVDQLVEVVRSNIQRTSERVCLNKPFS*

Sequence

>CNT30555298
ATCGCACATGGACTTATGCAGGATGAACTCAAGCATCATGCCGTGAGTTTGGCATGTCTTCACCTCAGTGTTACTGCTCGTAGCAACAGGCTGAATGATG
CTCCGGTTGATCAGCTCGTTGAAGTAGTCCGTAGCAACATCCAGAGAACTTCGGAGAGGGTCTGCCTCAACAAGCCCTTCAGCTGACCATCGCCTTATCA
GTTTTCCTCTCCTGACCGGATGGCCACTGGGGAAAATACCAAAATAGAGCAAGCAGGCCTTGATAACATGGCCAGGAAGGCTGGTATAGTTGTGAACAAG
TACATGCTTCATTCTTTCTAAAGTATCCTCTCTTTCCAGATGCATACCCAGATTGCCACACAACTTTGCATATTCTTGTGGTAGCTGTTGACCTTTACTT
TTCAAGAATTGGGCTGTTGATACAAGGGCAAGTGGTAAACCATCACATTTAGTACTCAGCACTGTTTCTGAACCAGAGCTGCAGGCATTTGCTATGGAAT
GGATGGCCGTCGTCACCAGCACTATGCTGCTTGATCCTGTATCTACAGGGAAAGCATCTTTTATAGTACTGTTCCAATATTCCCTCTGGATGTCATCAAT
TACAATGAAGAACCTATAGAGATGTATTGAGAAATAAGGATGGGAAAGTGTCCT