Detailed information on CNT30555277


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONOSAT000734, E-value = 4e-133

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30370252Oryza glaberrimaOryza glumipatula89.6613.9188.91442forward
CNT30103384Oryza glaberrimaOryza rufipogon10095.5493.1493forward

Expression of CNT30555277

Peptides detected in this lncRNA

>peptide 1 (62 aa)
MTAAAAVVVGDPGEVVARRWRFPSLAAPPLDRIRVCRVELAAAVNLVPCAMPASTPLLYGAV*

>peptide 2 (31 aa)
MGAHQPLGWTPPIRARSRSVVSLGPTGGRSI*

>peptide 3 (37 aa)
MAQCDGGPPAIGLDAPDQGAVKVRCVVGPDGWEIYLTE

>peptide 4 (57 aa)
MKKCRPSSSLALDCRGCGAGEVDGDDGCSSGGRGRSRRGRGAAVAFPVTGCAPSRSD*

Sequence

>CNT30555277
TGTTAGACTTTGCTCTAGGATCACCTAGGTTAGATCTAGTCAGGTGGTTCTATTTGGGATTGATGTTTGAACTATAGAGATTGAAAACGGGAGAGGGTTT
AGATAGACCGACCGGTTGAGGTGTTGGAGGATGAAGAAGTGCCGGCCATCGTCGTCGTTGGCGCTCGATTGTCGTGGATGCGGCGCCGGTGAGGTCGACG
GCGATGACGGCTGCAGCAGCGGTGGTCGTGGGCGATCCCGGCGAGGTCGTGGCGCGGCGGTGGCGTTTCCCGTCACTGGCTGCGCCCCCTCTCGATCGGA
TTAGGGTTTGTAGGGTGGAGTTGGCGGCGGCGGTGAATCTCGTCCCTTGTGCCATGCCGGCCTCCACCCCTCTTTTATATGGCGCAGTGTGATGGGGGCC
CACCAGCCATTGGGCTGGACGCCCCCGATCAGGGCGCGGTCAAGGTCCGTTGTGTCGTTGGGCCCGACGGGTGGGAGATCTATCTAACAGAAA