Detailed information on CNT30555270


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30697237Oryza glaberrimaOryza sativa70.1910099.69325forward
CNT30676942Oryza glaberrimaSetaria viridis23.9722.7997.3111forward
CNT30524376Oryza glaberrimaSetaria italica23.9718.6297.3111forward
CNT30297243Oryza glaberrimaTriticum aestivum23.9737.2594.59111forward
CNT30439786Oryza glaberrimaAegilops tauschii23.9731.5394.59111forward
CNT30662749Oryza glaberrimaTriticum dicoccoides23.5439.3594.5109forward
CNT304300Oryza glaberrimaZea mays23.9717.2193.69111forward
CNT30371248Oryza glaberrimaOryza glumipatula70.4174.09100326forward

Expression of CNT30555270

Peptides detected in this lncRNA

>peptide 1 (52 aa)
MSTMMKTTSRQFTQVANISQPQIQTLGPSYQKIRMNRFSNSSPNSTIIYTYI*

Sequence

>CNT30555270
CAAAATTCATGGAAACCATTATTAGAGACAATTTACTCAGGTAGTAGCAAATAGTCAAAATTCAAACAAAAAAAAATCCAGGGAAACCATTCAGCAATGT
CAACGATGATGAAAACCACTTCGAGACAATTTACTCAGGTAGCAAATATTTCTCAGCCACAAATCCAAACACTTGGTCCTTCCTATCAGAAGATCAGAAT
GAACAGGTTTTCAAATTCATCTCCCAACTCGACGATAATTTACACGTACATTTAACACATTCTTCCACCCTTCTCAAACTCCTCCCTTCTTCTTCCCGGG
TAAGATTAAAATTAACTTGAGGCCAGCCAGCGTCGCCGGCGGCGAGATGTTTACAGGCTGGGCGTCCTCTCGGCGGCGCCGGAGATGACGGTGAGCAGGT
TGATGGGGATGCTATTGCCGAAGTAGTTGAGGGTGTTGCCGTCCAGGAGGAGGGCGCCGGTCT