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Detailed information on CNT30555247


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30696498Oryza glaberrimaOryza sativa87.993.3898.99494forward
CNT30596657Oryza glaberrimaOryza meridionalis36.1237.1889.66203forward
CNT30102853Oryza glaberrimaOryza rufipogon42.5359.7585.77239forward
CNT30574763Oryza glaberrimaOryza barthii34.8821.7585.2196forward

Expression of CNT30555247

Peptides detected in this lncRNA

>peptide 1 (41 aa)
MKLPLLYFVLYDGLVNPVMKYVPCCPCIQIYAFVMFIDCLR*

Sequence

>CNT30555247
CTCTCTCCTAATTTTCTCCTTCCCGAATCTTCTTGAAAATGCAAGAATCAAGCCCTGCATGTCACACCACTAGATCCTTGTGATTCTAAGCTTTCCATCC
ATCCAAATGGCTTGCACATGCATAGATTTGTGAGGGAGATCGAGAAGAAAAGAGAAGGAGCTTGCTGCTTGGTGCAGTAGCAGTAACACTTCGTTTTCCT
CCACTTGATTCGGAGAATTTGGAGTACGTGGAGCAAGACTCAGAGGTTGAGTGTGTTTCCGCATAGCAGCAAGGTGAGGATGCCGGCGTTGATGTTGTGC
CCTACTACTATCCCACCGAGGGTGGCGAGGGTAGCGAGTAGTTGAAGTTCGCTCTTGCCCCAGTTGGTTGCCCTTGTGGGGTTGTTGGCACACCACAGGT
TTTTCTTTTGCTTATGAGAAATTATGAAACTTCCGCTGCTATATTTTGTGTTGTATGATGGGCTTGTGAACCCCGTTATGAAATATGTACCTTGCTGTCC
TTGTATCCAGATTTATGCATTTGTGATGTTTATCGATTGCTTGCGATGAAAGTGCGAGGCTA